diff --git a/main.nf b/main.nf index 60fe35c04f72122ec4a0311a0fb6548e752d69f4..5550fb1d156943fb8cdf46f6ae09a64b347a463a 100644 --- a/main.nf +++ b/main.nf @@ -249,31 +249,36 @@ log.info """======================================================= nf-core/hic v${workflow.manifest.version}" =======================================================""" def summary = [:] -summary['Pipeline Name'] = 'nf-core/hic' +summary['Pipeline Name'] = 'nf-core/hic' summary['Pipeline Version'] = workflow.manifest.version -summary['Run Name'] = custom_runName ?: workflow.runName - -summary['Reads'] = params.reads -summary['Fasta Ref'] = params.fasta - - -summary['Max Memory'] = params.max_memory -summary['Max CPUs'] = params.max_cpus -summary['Max Time'] = params.max_time -summary['Output dir'] = params.outdir -summary['Working dir'] = workflow.workDir +summary['Run Name'] = custom_runName ?: workflow.runName + +summary['Reads'] = params.reads +summary['splitFastq'] = params.splitFastq +summary['Fasta Ref'] = params.fasta +summary['Ligation Motif'] = params.ligation_site +summary['DNase Mode'] = params.dnase +summary['Remove Dup'] = params.rm_dup +summary['Maps resolution'] = params.bin_size + +summary['Max Memory'] = params.max_memory +summary['Max CPUs'] = params.max_cpus +summary['Max Time'] = params.max_time +summary['Output dir'] = params.outdir +summary['Working dir'] = workflow.workDir summary['Container Engine'] = workflow.containerEngine -if(workflow.containerEngine) summary['Container'] = workflow.container -summary['Current home'] = "$HOME" -summary['Current user'] = "$USER" -summary['Current path'] = "$PWD" -summary['Working dir'] = workflow.workDir -summary['Output dir'] = params.outdir -summary['Script dir'] = workflow.projectDir -summary['Config Profile'] = workflow.profile +if(workflow.containerEngine) + summary['Container'] = workflow.container +summary['Current home'] = "$HOME" +summary['Current user'] = "$USER" +summary['Current path'] = "$PWD" +summary['Working dir'] = workflow.workDir +summary['Output dir'] = params.outdir +summary['Script dir'] = workflow.projectDir +summary['Config Profile'] = workflow.profile if(workflow.profile == 'awsbatch'){ - summary['AWS Region'] = params.awsregion - summary['AWS Queue'] = params.awsqueue + summary['AWS Region'] = params.awsregion + summary['AWS Queue'] = params.awsqueue } if(params.email) summary['E-mail Address'] = params.email log.info summary.collect { k,v -> "${k.padRight(15)}: $v" }.join("\n")