diff --git a/nextflow.config b/nextflow.config index 4513d65e9e615b858a5bc683fa983fb4503e7be2..9efeef9619786ac683dd1371cd30f257206ce253 100644 --- a/nextflow.config +++ b/nextflow.config @@ -54,13 +54,13 @@ params { ligation_site='GATCGATC,GATCANTC,GANTGATC,GANTANTC' } } - + min_restriction_fragment_size = 0 max_restriction_fragment_size = 0 min_insert_size = 0 max_insert_size = 0 save_pairs_intermediates = false - + // Dnase Hi-C dnase = false min_cis_dist = 0 @@ -111,7 +111,7 @@ params { validate_params = true show_hidden_params = false schema_ignore_params = 'genomes,digest' - + // Config options custom_config_version = 'master' custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}" @@ -242,6 +242,12 @@ env { // Capture exit codes from upstream processes when piping process.shell = ['/bin/bash', '-euo', 'pipefail'] +// Set default registry for Docker and Podman independent of -profile +// Will not be used unless Docker / Podman are enabled +// Set to your registry if you have a mirror of containers +docker.registry = 'quay.io' +podman.registry = 'quay.io' + def trace_timestamp = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss') timeline { enabled = true