From 28bf019455f617f87fe930a0e8be664d2214807a Mon Sep 17 00:00:00 2001 From: nservant <nicolas.servant@curie.fr> Date: Mon, 25 Jan 2021 20:11:39 +0100 Subject: [PATCH] [LINT] markdown --- CHANGELOG.md | 3 +-- README.md | 1 - docs/usage.md | 1 - 3 files changed, 1 insertion(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 19ed9e9..27746ee 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v1.3.0dev +## v1.3.0dev * Add HiCExplorer distance decay quality control * Add HiCExplorer TADs calling @@ -130,4 +130,3 @@ if not provided. * Normalization of the contact maps using the ICE algorithm * Generation of cooler file for visualization on [higlass](https://higlass.io/) * Quality report based on HiC-Pro MultiQC module - diff --git a/README.md b/README.md index c0c8f5b..8fd90f4 100644 --- a/README.md +++ b/README.md @@ -108,4 +108,3 @@ In addition, references of tools and data used in this pipeline are as follows: > Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie, Eric Viara, Chongjian Chen, Jean-Philippe Vert, Job Dekker, Edith Heard, Emmanuel Barillot. > > Genome Biology 2015, 16:259 doi: [10.1186/s13059-015-0831-x](https://dx.doi.org/10.1186/s13059-015-0831-x) - diff --git a/docs/usage.md b/docs/usage.md index 5e644c7..4e7946c 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -30,7 +30,6 @@ results # Finished results (configurable, see below) When you run the above command, Nextflow automatically pulls the pipeline code from GitHub and stores it as a cached version. When running the pipeline after this, it will always use the cached version if available - even if the pipeline has been updated since. To make sure that you're running the latest version of the pipeline, make sure that you regularly update the cached version of the pipeline: - ```bash nextflow pull nf-core/hic ``` -- GitLab