From 15f3b5800b892aa3c0799887cabc8360d94ee77d Mon Sep 17 00:00:00 2001
From: nservant <nicolas.servant@curie.fr>
Date: Thu, 4 Feb 2021 13:54:51 +0100
Subject: [PATCH] [JSON] update schema
---
nextflow_schema.json | 9 +++++++++
1 file changed, 9 insertions(+)
diff --git a/nextflow_schema.json b/nextflow_schema.json
index f888dbb..952fb4a 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -279,6 +279,11 @@
"type": "string",
"default": "40000,20000",
"description": "Resolution to run TADs callers (comma separated)"
+ },
+ "res_compartments": {
+ "type": "integer",
+ "default": 250000,
+ "description": "Resolution for compartments calling"
}
}
},
@@ -308,6 +313,10 @@
"description": "Do not run TADs calling",
"default": "False"
},
+ "skip_compartments": {
+ "type": "string",
+ "description": "Do not run compartments calling"
+ },
"skip_balancing": {
"type": "string",
"description": "Do not run cooler balancing normalization",
--
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