From 0c28e9ff737860c36e4b785ead8abee6e4ecaf60 Mon Sep 17 00:00:00 2001
From: nservant <nicolas.servant@curie.fr>
Date: Thu, 5 May 2022 20:34:43 +0200
Subject: [PATCH] [MODIF] add containers info
---
modules/local/cooltools/eigs-cis.nf | 5 +++++
modules/local/cooltools/insulation.nf | 5 +++++
2 files changed, 10 insertions(+)
diff --git a/modules/local/cooltools/eigs-cis.nf b/modules/local/cooltools/eigs-cis.nf
index a8b97b9..0c35d8e 100644
--- a/modules/local/cooltools/eigs-cis.nf
+++ b/modules/local/cooltools/eigs-cis.nf
@@ -5,6 +5,11 @@
process CALL_COMPARTMENTS {
label 'process_medium'
+ conda (params.enable_conda ? "bioconda::cooltools=0.5.1" : null)
+ container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+ 'https://depot.galaxyproject.org/singularity/cooltools:0.5.1--py37h37892f8_0' :
+ 'quay.io/biocontainers/cooltools:0.5.1--py37h37892f8_0' }"
+
input:
tuple val(meta), path(cool), val(resolution)
path(fasta)
diff --git a/modules/local/cooltools/insulation.nf b/modules/local/cooltools/insulation.nf
index 531bab9..756579a 100644
--- a/modules/local/cooltools/insulation.nf
+++ b/modules/local/cooltools/insulation.nf
@@ -5,6 +5,11 @@
process INSULATION {
label 'process_medium'
+ conda (params.enable_conda ? "bioconda::cooltools=0.5.1" : null)
+ container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+ 'https://depot.galaxyproject.org/singularity/cooltools:0.5.1--py37h37892f8_0' :
+ 'quay.io/biocontainers/cooltools:0.5.1--py37h37892f8_0' }"
+
input:
tuple val(meta), path(cool)
--
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