diff --git a/modules/local/cooltools/eigs-cis.nf b/modules/local/cooltools/eigs-cis.nf
index a8b97b9bb18008734f7b5d50950a5ebf597fc191..0c35d8ec7c34eae67eeb3fe85e6d8c052bb595d0 100644
--- a/modules/local/cooltools/eigs-cis.nf
+++ b/modules/local/cooltools/eigs-cis.nf
@@ -5,6 +5,11 @@
 process CALL_COMPARTMENTS {
   label 'process_medium'
 
+  conda (params.enable_conda ? "bioconda::cooltools=0.5.1" : null)
+  container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+      'https://depot.galaxyproject.org/singularity/cooltools:0.5.1--py37h37892f8_0' :
+      'quay.io/biocontainers/cooltools:0.5.1--py37h37892f8_0' }"
+
   input:
   tuple val(meta), path(cool), val(resolution)
   path(fasta) 
diff --git a/modules/local/cooltools/insulation.nf b/modules/local/cooltools/insulation.nf
index 531bab94dd948e6fe7cab6c884c10829447351cf..756579a98695845a099db2d0563c503aaa046867 100644
--- a/modules/local/cooltools/insulation.nf
+++ b/modules/local/cooltools/insulation.nf
@@ -5,6 +5,11 @@
 process INSULATION {
   label 'process_medium'
 
+  conda (params.enable_conda ? "bioconda::cooltools=0.5.1" : null)
+  container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+      'https://depot.galaxyproject.org/singularity/cooltools:0.5.1--py37h37892f8_0' :
+      'quay.io/biocontainers/cooltools:0.5.1--py37h37892f8_0' }" 
+
   input:
   tuple val(meta), path(cool)