diff --git a/README.md b/README.md index 4425886814b6dc275b2c06185fa900fe3d7b98c6..b8e1b10e55848dc0801bc66dfb6b27bd59c1dfc6 100644 --- a/README.md +++ b/README.md @@ -85,7 +85,7 @@ found in the `docs/` directory: 5. [Troubleshooting](https://nf-co.re/usage/troubleshooting) The nf-core/hic pipeline comes with documentation about the pipeline which -you can read at [https://nf-core/hic/usage](https://nf-core/hic/usage or +you can read at [https://nf-core/hic/usage](https://nf-core/hic/usage) or find in the [`docs/` directory](docs). For further information or help, don't hesitate to get in touch on diff --git a/docs/usage.md b/docs/usage.md index fed908227ff9c632b8c332d916fb0cf3f35ac342..d4af9fde9ec578e37c7b7d6e3ba020b67c1fff42 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -209,7 +209,6 @@ notation to specify read pairs. If left unspecified, a default pattern is used: `data/*{1,2}.fastq.gz` - By default, the pipeline expects paired-end data. If you have single-end data, you need to specify `--single_end` on the command line when you launch the pipeline. A normal glob pattern, enclosed in quotation marks, can then be used for `--input`.