From 0ace3e03856a0d3c445053515d621d62458b7eb9 Mon Sep 17 00:00:00 2001
From: nservant <nicolas.servant@curie.fr>
Date: Mon, 30 Nov 2020 18:40:12 +0100
Subject: [PATCH] [MODIF] update test profile
---
main.nf | 17 +++++------------
1 file changed, 5 insertions(+), 12 deletions(-)
diff --git a/main.nf b/main.nf
index ef10335..5109b84 100644
--- a/main.nf
+++ b/main.nf
@@ -153,18 +153,11 @@ if (params.input_paths){
raw_reads = Channel.create()
raw_reads_2 = Channel.create()
- if ( params.split_fastq ){
- Channel
- .from( params.input_paths )
- .map { row -> [ row[0], [file(row[1][0]), file(row[1][1])]] }
- .splitFastq( by: params.fastq_chunks_size, pe:true, file: true, compress:true)
- .separate( raw_reads, raw_reads_2 ) { a -> [tuple(a[0], a[1]), tuple(a[0], a[1])] }
- }else{
- Channel
- .from( params.input_paths )
- .map { row -> [ row[0], [file(row[1][0]), file(row[1][1])]] }
- .separate( raw_reads, raw_reads_2 ) { a -> [tuple(a[0] + "_R1", a[1][0]), tuple(a[0] + "_R2", a[1][1])] }
- }
+ Channel
+ .from( params.input_paths )
+ .map { row -> [ row[0], [file(row[1][0]), file(row[1][1])]] }
+ .separate( raw_reads, raw_reads_2 ) { a -> [tuple(a[0] + "_R1", a[1][0]), tuple(a[0] + "_R2", a[1][1])] }
+
}else{
raw_reads = Channel.create()
raw_reads_2 = Channel.create()
--
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