From 08e5a646d847980b38ba81c8de9c2c162436fa06 Mon Sep 17 00:00:00 2001
From: Mia Croiset <mia.croiset@ens-lyon.fr>
Date: Wed, 15 Nov 2023 11:26:24 +0100
Subject: [PATCH] add arima for hicstuff as DpnII + HinfI
---
bin/hicstuff_bam2pairs.py | 2 +-
bin/hicstuff_fragments.py | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/bin/hicstuff_bam2pairs.py b/bin/hicstuff_bam2pairs.py
index 6e3cfeb..e626dca 100755
--- a/bin/hicstuff_bam2pairs.py
+++ b/bin/hicstuff_bam2pairs.py
@@ -169,7 +169,7 @@ if __name__ == "__main__":
elif enzyme == "mboi":
enzyme = "MboI"
elif enzyme == "arima":
- enzyme = "Arima"
+ enzyme = ["DpnII","HinfI"]
bam2pairs(bam1, bam2, out_pairs, info_contigs, min_qual)
diff --git a/bin/hicstuff_fragments.py b/bin/hicstuff_fragments.py
index 5594097..95fb0dc 100755
--- a/bin/hicstuff_fragments.py
+++ b/bin/hicstuff_fragments.py
@@ -43,7 +43,7 @@ if __name__ == "__main__":
elif enzyme == "mboi":
enzyme = "MboI"
elif enzyme == "arima":
- enzyme = "Arima"
+ enzyme = ["DpnII","HinfI"]
# Generate info_contigs and fragments_list output files
--
GitLab