From 082db14b3a509e88d5178690d118eb963b6403ab Mon Sep 17 00:00:00 2001
From: Mia Croiset <mia.croiset@ens-lyon.fr>
Date: Wed, 6 Dec 2023 10:47:11 +0100
Subject: [PATCH] docs add skip_plot_matrix flag

---
 docs/hicstuff_usage.md | 8 ++++++++
 docs/usage.md          | 8 ++++++++
 2 files changed, 16 insertions(+)

diff --git a/docs/hicstuff_usage.md b/docs/hicstuff_usage.md
index 28059c9..9a20ce2 100644
--- a/docs/hicstuff_usage.md
+++ b/docs/hicstuff_usage.md
@@ -234,6 +234,14 @@ Binsize for plotting matrix. Default: 10000
 --hicstuff_bin [binsize]
 ```
 
+### `--skip_plot_matrix`
+
+Do not plot matrices. Default: false
+
+```bash
+--skip_plot_matrix
+```
+
 > :warning: **Warning**: Depending of the size of your input, the bin size may not correspond and make the pipeline fail
 >>10000 is default for human genome.
 >>For yeast for example you may want to use a smaller bin
diff --git a/docs/usage.md b/docs/usage.md
index 98188da..0c3e0f9 100644
--- a/docs/usage.md
+++ b/docs/usage.md
@@ -640,6 +640,14 @@ Do not call TADs. Default: false
 --skip_tads
 ```
 
+### `--skip_plot_matrix`
+
+Do not plot matrices. Default: false
+
+```bash
+--skip_plot_matrix
+```
+
 ### `--skip_multiQC`
 
 If defined, the MultiQC report is not generated. Default: false
-- 
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