diff --git a/docs/hicstuff_usage.md b/docs/hicstuff_usage.md index 28059c925786db41c14d11a7cbb431929e9266e3..9a20ce2dd69987b254e89bd3fba85611ce02a3df 100644 --- a/docs/hicstuff_usage.md +++ b/docs/hicstuff_usage.md @@ -234,6 +234,14 @@ Binsize for plotting matrix. Default: 10000 --hicstuff_bin [binsize] ``` +### `--skip_plot_matrix` + +Do not plot matrices. Default: false + +```bash +--skip_plot_matrix +``` + > :warning: **Warning**: Depending of the size of your input, the bin size may not correspond and make the pipeline fail >>10000 is default for human genome. >>For yeast for example you may want to use a smaller bin diff --git a/docs/usage.md b/docs/usage.md index 98188da0b48032f8a4573524091aeaa6f4ac86f5..0c3e0f9e1abce84c0df24ff241b7f552c5f10993 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -640,6 +640,14 @@ Do not call TADs. Default: false --skip_tads ``` +### `--skip_plot_matrix` + +Do not plot matrices. Default: false + +```bash +--skip_plot_matrix +``` + ### `--skip_multiQC` If defined, the MultiQC report is not generated. Default: false