update pseudo_time.Rmd

.gitlab-ci.yml

@@ -3,6 +3,8 @@ pages:
   image: rocker/r-rmd
   script:
     - mkdir -p public/img
+    - ls -l
+    - pwd
     - make
     - cp 1_scrnaseq_data/scrnaseq_data.pdf 2_normalization/normalization.pdf 3_dimension_reduction/dimension_reduction.pdf 4_clustering/clustering.pdf 5_pseudo_time/pseudo_time.pdf 6_dea/dea.pdf public/
   artifacts:

5_pseudo_time/pseudo_time.Rmd

@@ -50,11 +50,18 @@ classoption: aspectratio=169
   }
 \end{center}
 
-
 # Continuous clustering
 
 ## Pseudo-time
 
+\begin{center}
+  \href{https://www.nature.com/articles/s41467-021-27464-5}{
+    \includegraphics[width=0.9\textwidth]{img/example.png}
+  }
+\end{center}
+
+## Pseudo-time
+
 \begin{center}
 \begin{columns}
 \column{0.5\textwidth}
@@ -162,7 +169,7 @@ traveling salesman problem (TSP)
 
 \begin{center}
   \href{http://cole-trapnell-lab.github.io/monocle-release/monocle3/}{
-    \includegraphics[width=0.7\textwidth]{img/monocle_3.png}
+    \includegraphics[width=0.9\textwidth]{img/monocle_3.png}
   }
 \end{center}
 
@@ -221,6 +228,13 @@ traveling salesman problem (TSP)
   }
 \end{center}
 
+## Slinshot
+\begin{center}
+  \href{https://www.nature.com/articles/s41467-021-27464-5}{
+    \includegraphics[width=\textwidth]{img/example_slingshot.png}
+  }
+\end{center}
+
 # Cycle detection
 
 ## reCAT
@@ -229,7 +243,7 @@ traveling salesman problem (TSP)
 
 \begin{center}
   \href{https://www.nature.com/articles/s41467-017-00039-z}{
-    \includegraphics[width=0.8\textwidth]{img/recat.png}
+    \includegraphics[width=0.9\textwidth]{img/recat.png}
   }
 \end{center}