Verified Commit 17da4c44 authored by Laurent Modolo's avatar Laurent Modolo
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update pseudo_time.Rmd

parent 745f0f8f
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image: rocker/r-rmd
script:
- mkdir -p public/img
- ls -l
- pwd
- make
- cp 1_scrnaseq_data/scrnaseq_data.pdf 2_normalization/normalization.pdf 3_dimension_reduction/dimension_reduction.pdf 4_clustering/clustering.pdf 5_pseudo_time/pseudo_time.pdf 6_dea/dea.pdf public/
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}
\end{center}
# Continuous clustering
## Pseudo-time
\begin{center}
\href{https://www.nature.com/articles/s41467-021-27464-5}{
\includegraphics[width=0.9\textwidth]{img/example.png}
}
\end{center}
## Pseudo-time
\begin{center}
\begin{columns}
\column{0.5\textwidth}
......@@ -162,7 +169,7 @@ traveling salesman problem (TSP)
\begin{center}
\href{http://cole-trapnell-lab.github.io/monocle-release/monocle3/}{
\includegraphics[width=0.7\textwidth]{img/monocle_3.png}
\includegraphics[width=0.9\textwidth]{img/monocle_3.png}
}
\end{center}
......@@ -221,6 +228,13 @@ traveling salesman problem (TSP)
}
\end{center}
## Slinshot
\begin{center}
\href{https://www.nature.com/articles/s41467-021-27464-5}{
\includegraphics[width=\textwidth]{img/example_slingshot.png}
}
\end{center}
# Cycle detection
## reCAT
......@@ -229,7 +243,7 @@ traveling salesman problem (TSP)
\begin{center}
\href{https://www.nature.com/articles/s41467-017-00039-z}{
\includegraphics[width=0.8\textwidth]{img/recat.png}
\includegraphics[width=0.9\textwidth]{img/recat.png}
}
\end{center}
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