From 2c011be20397066726e3a30dbec8d8ac6046fdf2 Mon Sep 17 00:00:00 2001
From: Carine Rey <carine.rey@ens-lyon.fr>
Date: Sun, 12 Sep 2021 15:03:33 +0000
Subject: [PATCH] Carine dev
---
README.md | 6 +++---
session_1/bioconductor.Rmd | 16 +++++++++++++++-
session_1/github.Rmd | 25 ++++++++++++++++++++++++-
3 files changed, 42 insertions(+), 5 deletions(-)
diff --git a/README.md b/README.md
index f6566b0..d6212e8 100644
--- a/README.md
+++ b/README.md
@@ -3,12 +3,12 @@
The sessions will be starting the 14/09:
- **Monday 11h - 12h30**
- - salle de TP du CBP: 20/09, 27/04, 04/10, 11/10, 18/10, 25/10, 08/11, 15/11
+ - salle de TP du CBP: 20/09, 27/09, 04/10, 11/10, 18/10, 25/10, 08/11, 15/11
- **Tuesday 11h - 12h30**
- - salle de TP du CBP: 14/09, 21/04
+ - salle de TP du CBP: 14/09, 21/09
- salle de TP de l’IBCP: 12/10, 19/10, 26/10, 02/11, 09/11, 23/11
- **Friday 11h - 12h30**
- - salle de TP du CBP: 17/09, 24/04, 01/10, 08/10, 15/10, 22/10, 29/10, 05/11, 12/11, 19/11
+ - salle de TP du CBP: 17/09, 24/09, 01/10, 08/10, 15/10, 22/10, 29/10, 05/11, 12/11, 19/11
Groups:
## Monday
diff --git a/session_1/bioconductor.Rmd b/session_1/bioconductor.Rmd
index 1e366f8..128b751 100644
--- a/session_1/bioconductor.Rmd
+++ b/session_1/bioconductor.Rmd
@@ -24,4 +24,18 @@ klippy::klippy(
tooltip_success = 'Copied !')
```
-To install packages from [Bioconducor](http://www.bioconductor.org) you need to
\ No newline at end of file
+To install packages from [bioconductor](http://www.bioconductor.org) you must first install a package called "BiocManager".
+This package imports a function called "install" allowing you to install packages hosted in bioconductor from their name.
+
+To install "BiocManager" you must type:
+
+```R
+install.packages("BiocManager")
+```
+
+Then to install, for example "tximport", you just have to write:
+
+```R
+BiocManager::install("tximport")
+```
+
diff --git a/session_1/github.Rmd b/session_1/github.Rmd
index ce8900a..60d223b 100644
--- a/session_1/github.Rmd
+++ b/session_1/github.Rmd
@@ -24,4 +24,27 @@ klippy::klippy(
tooltip_success = 'Copied !')
```
-To install packages from [github](https://github.com/) you need to
\ No newline at end of file
+If you need to install a package that is not available on the CRAN but on a github repository, you can do it using the "remotes" package. Indeed this package imports functions that will allow you to install a package available on [github](https://github.com/) or bitbucket or gitlab directly on your computer.
+
+To use the "remotes" packages, you must first install it:
+
+```R
+install.packages("remotes")
+```
+
+Once "remotes" is installed, you will be able to install all R package from github or from their URL.
+
+For example, if you want to install the last version of a "gganimate", which allow you to animate ggplot2 graphes, you can use :
+
+```R
+remotes::install_github("thomasp85/gganimate")
+```
+
+By default the latest version of the package is installed, if you want a given version you can specify it :
+
+```R
+remotes::install_github("thomasp85/gganimate@v1.0.7")
+```
+
+You can find more information in the documentation of remotes : [https://remotes.r-lib.org](https://remotes.r-lib.org)
+
--
GitLab