diff --git a/session_1/session_1.Rmd b/session_1/session_1.Rmd index 5706d045327bf6376e6935326a2ffa744fbf4c58..4586fd4b6433071848cc6ae03ed4f1f2913eecde 100644 --- a/session_1/session_1.Rmd +++ b/session_1/session_1.Rmd @@ -2,43 +2,18 @@ title: 'R.1: Introduction to R and RStudio' author: "Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr);\n Hélène Polvèche [hpolveche@istem.fr](mailto:hpolveche@istem.fr)" date: "2022" -output: - rmdformats::downcute: - self_contain: true - use_bookdown: true - default_style: "light" - lightbox: true - css: "../www/style_Rmd.css" --- ```{r include=FALSE} library(fontawesome) ``` - `r fa(name = "fas fa-house", fill = "grey", height = "1em")`  https://can.gitbiopages.ens-lyon.fr/R_basis/ - ```{r setup, include=FALSE , echo=FALSE} rm(list=ls()) knitr::opts_chunk$set(echo = TRUE) knitr::opts_chunk$set(comment = NA) ``` -```{r klippy_install, echo=FALSE, include=FALSE} -if (! require("klippy")) { - install.packages("remotes") - remotes::install_github("rlesur/klippy") -} -``` - - -```{r klippy, echo=FALSE, include=TRUE} -klippy::klippy( - position = c('top', 'right'), - color = "white", - tooltip_message = 'Click to copy', - tooltip_success = 'Copied !') -``` - # Introduction diff --git a/session_2/session_2.Rmd b/session_2/session_2.Rmd index f1f1ae348818699a1f8520b36db0224be0fef8fb..3957e32fe4515bde3dd2ef769c0871e10d50ca4e 100644 --- a/session_2/session_2.Rmd +++ b/session_2/session_2.Rmd @@ -2,33 +2,21 @@ title: "R.2: introduction to Tidyverse" author: "Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr);\nHélène Polvèche [hpolveche@istem.fr](mailto:hpolveche@istem.fr)" date: "2022" -output: - rmdformats::downcute: - self_contain: true - use_bookdown: true - default_style: "light" - lightbox: true - css: "../www/style_Rmd.css" --- ```{r include=FALSE} library(fontawesome) -``` - `r fa(name = "fas fa-house", fill = "grey", height = "1em")`  https://can.gitbiopages.ens-lyon.fr/R_basis/ +if("conflicted" %in% .packages()) + conflicted::conflicts_prefer(dplyr::filter) +``` ```{r setup, include=FALSE} rm(list=ls()) knitr::opts_chunk$set(echo = TRUE) knitr::opts_chunk$set(comment = NA) ``` -```{r klippy, echo=FALSE, include=TRUE} -klippy::klippy( - position = c('top', 'right'), - color = "white", - tooltip_message = 'Click to copy', - tooltip_success = 'Copied !') -``` + ```{r download_data, include=FALSE, eval=T} library("tidyverse") tmp <- tempfile(fileext = ".zip") diff --git a/session_3/session_3.Rmd b/session_3/session_3.Rmd index d13d3d6d762b653baff64ffe67ba24fa913e7bcb..8e07389386e5e2b4e6984d2b5b3bebac07d01831 100644 --- a/session_3/session_3.Rmd +++ b/session_3/session_3.Rmd @@ -2,33 +2,17 @@ title: 'R.3: Transformations with ggplot2' author: "Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr), Hélène Polvèche [hpolveche@istem.fr](mailto:hpolveche@istem.fr)" date: "2022" -output: - rmdformats::downcute: - self_contain: true - use_bookdown: true - default_style: "light" - lightbox: true - css: "../www/style_Rmd.css" --- ```{r include=FALSE} library(fontawesome) ``` - `r fa(name = "fas fa-house", fill = "grey", height = "1em")`  https://can.gitbiopages.ens-lyon.fr/R_basis/ - ```{r setup, include=FALSE} rm(list=ls()) knitr::opts_chunk$set(echo = TRUE) knitr::opts_chunk$set(comment = NA) ``` -```{r klippy, echo=FALSE, include=TRUE} -klippy::klippy( - position = c('top', 'right'), - color = "white", - tooltip_message = 'Click to copy', - tooltip_success = 'Copied !') -``` # Introduction diff --git a/session_4/session_4.Rmd b/session_4/session_4.Rmd index 1839c1aae4c03eb9a11486ead39e6d60a178658b..d22517b23dc67f9a427622ffd73fc6dcc25e87f0 100644 --- a/session_4/session_4.Rmd +++ b/session_4/session_4.Rmd @@ -2,33 +2,20 @@ title: "R.4: data transformation" author: "Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr), Hélène Polvèche [hpolveche@istem.fr](mailto:hpolveche@istem.fr)" date: "2022" -output: - rmdformats::downcute: - self_contain: true - use_bookdown: true - default_style: "light" - lightbox: true - css: "../www/style_Rmd.css" --- ```{r include=FALSE} library(fontawesome) -``` - `r fa(name = "fas fa-house", fill = "grey", height = "1em")`  https://can.gitbiopages.ens-lyon.fr/R_basis/ +if("conflicted" %in% .packages()) + conflicted::conflicts_prefer(dplyr::filter) +``` ```{r setup, include=FALSE} rm(list=ls()) knitr::opts_chunk$set(echo = TRUE) knitr::opts_chunk$set(comment = NA) ``` -```{r klippy, echo=FALSE, include=TRUE} -klippy::klippy( - position = c('top', 'right'), - color = "white", - tooltip_message = 'Click to copy', - tooltip_success = 'Copied !') -``` # Introduction diff --git a/session_5/session_5.Rmd b/session_5/session_5.Rmd index 16aed13072f41788ee217e7c9e3e7a7efc09611d..33d98c510920a9baebc08ac5b6d644a62cda0a96 100644 --- a/session_5/session_5.Rmd +++ b/session_5/session_5.Rmd @@ -1,34 +1,21 @@ --- -title: "R#5: Pipping and grouping" +title: "R.5: Pipping and grouping" author: "Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr)" date: "2022" -output: - rmdformats::downcute: - self_contain: true - use_bookdown: true - default_style: "light" - lightbox: true - css: "../www/style_Rmd.css" --- ```{r include=FALSE} library(fontawesome) -``` - `r fa(name = "fas fa-house", fill = "grey", height = "1em")`  https://can.gitbiopages.ens-lyon.fr/R_basis/ +if("conflicted" %in% .packages()) + conflicted::conflicts_prefer(dplyr::filter) +``` ```{r setup, include=FALSE} rm(list=ls()) knitr::opts_chunk$set(echo = TRUE) knitr::opts_chunk$set(comment = NA) ``` -```{r klippy, echo=FALSE, include=TRUE} -klippy::klippy( - position = c('top', 'right'), - color = "white", - tooltip_message = 'Click to copy', - tooltip_success = 'Copied !') -``` # Introduction diff --git a/session_6/session_6.Rmd b/session_6/session_6.Rmd index f159cc769c7c8ea3ca3b0ab1c032878a9deff9f5..5188b939c56e27b787f8caa5d369b00d5a941cd3 100644 --- a/session_6/session_6.Rmd +++ b/session_6/session_6.Rmd @@ -2,34 +2,17 @@ title: "R.6: tidydata" author: "Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr);\nCarine Rey [carine.rey@ens-lyon.fr](mailto:carine.rey@ens-lyon.fr)" date: "2022" -output: - rmdformats::downcute: - self_contain: true - use_bookdown: true - default_style: "light" - lightbox: true - css: "../www/style_Rmd.css" --- ```{r include=FALSE} library(fontawesome) ``` - `r fa(name = "fas fa-house", fill = "grey", height = "1em")`  https://can.gitbiopages.ens-lyon.fr/R_basis/ - - ```{r setup, include=FALSE} rm(list=ls()) knitr::opts_chunk$set(echo = TRUE) knitr::opts_chunk$set(comment = NA) ``` -```{r klippy, echo=FALSE, include=TRUE} -klippy::klippy( - position = c('top', 'right'), - color = "white", - tooltip_message = 'Click to copy', - tooltip_success = 'Copied !') -``` # Introduction diff --git a/session_7/session_7.Rmd b/session_7/session_7.Rmd index e26c559326a4972d8192edd7018d7eb99565ca6c..7ada9ead52b3f9b4312b0acfc5fd6b31e1edeb53 100644 --- a/session_7/session_7.Rmd +++ b/session_7/session_7.Rmd @@ -2,34 +2,20 @@ title: "R.7: String & RegExp" author: "Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr)" date: "2022" -output: - rmdformats::downcute: - self_contain: true - use_bookdown: true - default_style: "light" - lightbox: true - css: "../www/style_Rmd.css" --- ```{r include=FALSE} library(fontawesome) -``` - - `r fa(name = "fas fa-house", fill = "grey", height = "1em")`  https://can.gitbiopages.ens-lyon.fr/R_basis/ +if("conflicted" %in% .packages()) + conflicted::conflicts_prefer(dplyr::filter) +``` ```{r setup, include=FALSE} rm(list=ls()) knitr::opts_chunk$set(echo = TRUE) knitr::opts_chunk$set(comment = NA) ``` -```{r klippy, echo=FALSE, include=TRUE} -klippy::klippy( - position = c('top', 'right'), - color = "white", - tooltip_message = 'Click to copy', - tooltip_success = 'Copied !') -``` # Introduction diff --git a/session_8/session_8.Rmd b/session_8/session_8.Rmd index 35045b14d5244f6c1e0d524f9e059728295654fc..34378260d3af549b08a59832be05f7227095eaab 100644 --- a/session_8/session_8.Rmd +++ b/session_8/session_8.Rmd @@ -2,34 +2,20 @@ title: "R.8: Factors" author: "Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr)" date: "2022" -output: - rmdformats::downcute: - self_contain: true - use_bookdown: true - default_style: "light" - lightbox: true - css: "../www/style_Rmd.css" --- ```{r include=FALSE} library(fontawesome) -``` - - `r fa(name = "fas fa-house", fill = "grey", height = "1em")`  https://can.gitbiopages.ens-lyon.fr/R_basis/ +if("conflicted" %in% .packages()) + conflicted::conflicts_prefer(dplyr::filter) +``` ```{r setup, include=FALSE} rm(list=ls()) knitr::opts_chunk$set(echo = TRUE) knitr::opts_chunk$set(comment = NA) ``` -```{r klippy, echo=FALSE, include=TRUE} -klippy::klippy( - position = c('top', 'right'), - color = "white", - tooltip_message = 'Click to copy', - tooltip_success = 'Copied !') -``` # Introduction