diff --git a/apps/umitools/install_0.3.4.sh b/apps/umitools/install_0.3.4.sh index 99632934daafacb64cc17436f9aca66d1e99b7f4..f5df8e16cb6411c8574aca36a04cc63a4faeb918 100644 --- a/apps/umitools/install_0.3.4.sh +++ b/apps/umitools/install_0.3.4.sh @@ -37,15 +37,9 @@ source ../build_env.sh module load Python/3.6.1 UMITOOLS_VERSION=0.3.4 -UMITOOLS_ROOT=/Xnfs/lbmcdb/common/modules/apps/UMITOOLS/${UMITOOLS_VERSION} -mkdir -p ${UMITOOLS_VERSION}/lib/python3.6/dist-packages/ -PYTHONPATH=${UMITOOLS_ROOT}lib/python3.6/dist-packages/:$PYTHONPATH +UMITOOLS_ROOT=/Xnfs/lbmcdb/common/modules/apps/umitools/${UMITOOLS_VERSION} +mkdir -p ${UMITOOLS_VERSION}/lib/python3.5/dist-packages/ +PYTHONPATH=${UMITOOLS_ROOT}lib/python3.5/dist-packages/:$PYTHONPATH - -git clone https://github.com/weng-lab/umitools.git -cd umitools -python setup.py install --single-version-externally-managed --prefix ${UMITOOLS_ROOT} --record markupsafe_install.txt -cd .. -rm -Rf markupsafe +pip install umitools==${UMITOOLS_VERSION} --prefix ${UMITOOLS_ROOT} mv bin lib ${UMITOOLS_VERSION}/ -rm -Rf UMITOOLS diff --git a/modulefiles/umitools/0.3.4.lua b/modulefiles/umitools/0.3.4.lua index 8c0a40c266ad84d4cdc268f46608f512c21e7909..6010c1323decc1dc31e5670d3a94b3ca42cb1153 100644 --- a/modulefiles/umitools/0.3.4.lua +++ b/modulefiles/umitools/0.3.4.lua @@ -39,6 +39,6 @@ conflict("cutadapt") conflict("Python/2.7.13") load("Python/3.6.1") prereq_any("Python/3.6.1") -prepend_path{"PYTHONPATH","/Xnfs/lbmcdb/common/modules/apps/umitools/0.3.4/lib/python3.6/site-packages/",delim=":",priority="0"} +prepend_path{"PYTHONPATH","/Xnfs/lbmcdb/common/modules/apps/umitools/0.3.4/lib/python3.5/site-packages/",delim=":",priority="0"} prepend_path{"PATH","/Xnfs/lbmcdb/common/modules/apps/umitools/0.3.4/bin",delim=":",priority="0"} setenv("HTSEQ_PATH","/Xnfs/lbmcdb/common/modules/apps/umitools/0.3.4/bin")