diff --git a/apps/bcftools/.gitignore b/apps/bcftools/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/bcftools/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/bioawk/.gitignore b/apps/bioawk/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/bioawk/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/bowtie2/.gitignore b/apps/bowtie2/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/bowtie2/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/canu/.gitignore b/apps/canu/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/canu/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/cutadapt/.gitignore b/apps/cutadapt/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/cutadapt/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/deeptools/.gitignore b/apps/deeptools/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/deeptools/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/file_handle/.gitignore b/apps/file_handle/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/file_handle/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/gatk/.gitignore b/apps/gatk/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/gatk/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/htseq/.gitignore b/apps/htseq/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/htseq/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/kallisto/.gitignore b/apps/kallisto/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/kallisto/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/music/.gitignore b/apps/music/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/music/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/ncdu/.gitignore b/apps/ncdu/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/ncdu/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/ncdu/ncdu-1.13.tar.gz b/apps/ncdu/ncdu-1.13.tar.gz
new file mode 100644
index 0000000000000000000000000000000000000000..69badde47000bf9daa10c09f300b03f883a58386
Binary files /dev/null and b/apps/ncdu/ncdu-1.13.tar.gz differ
diff --git a/apps/nextflow/.gitignore b/apps/nextflow/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/nextflow/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/picard/.gitignore b/apps/picard/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/picard/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/pigz/.gitignore b/apps/pigz/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/pigz/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/rsem/.gitignore b/apps/rsem/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/rsem/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/sambamba/.gitignore b/apps/sambamba/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/sambamba/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/samblaster/.gitignore b/apps/samblaster/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/samblaster/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/samtools/.gitignore b/apps/samtools/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/samtools/.gitignore
@@ -0,0 +1 @@
+*/
diff --git a/apps/tophat/.gitignore b/apps/tophat/.gitignore
new file mode 100644
index 0000000000000000000000000000000000000000..355164c126511e7d9f9896171414647f098dd30e
--- /dev/null
+++ b/apps/tophat/.gitignore
@@ -0,0 +1 @@
+*/