diff --git a/apps/MUSIC/install_6613c53.sh b/apps/MUSIC/install_6613c53.sh new file mode 100644 index 0000000000000000000000000000000000000000..4b9d0f4263401c257630e35a548ce1929596724c --- /dev/null +++ b/apps/MUSIC/install_6613c53.sh @@ -0,0 +1,51 @@ +#!/bin/bash +# Copyright claire burny for the LBMC UMR 5239 ©. +# contributor(s) : claire burny (2017) +# +# claire.burny@ens-lyon.fr +# +# This software is a computer program whose purpose is to manage dated file +# names in complience with the bioinformatic good practices used in the LBMC. +# +# This software is governed by the CeCILL license under French law and +# abiding by the rules of distribution of free software. You can use, +# modify and/ or redistribute the software under the terms of the CeCILL +# license as circulated by CEA, CNRS and INRIA at the following URL +# "http://www.cecill.info". +# +# As a counterpart to the access to the source code and rights to copy, +# modify and redistribute granted by the license, users are provided only +# with a limited warranty and the software's author, the holder of the +# economic rights, and the successive licensors have only limited +# liability. +# +# In this respect, the user's attention is drawn to the risks associated +# with loading, using, modifying and/or developing or reproducing the +# software by the user in light of its specific status of free software, +# that may mean that it is complicated to manipulate, and that also +# therefore means that it is reserved for developers and experienced +# professionals having in-depth computer knowledge. Users are therefore +# encouraged to load and test the software's suitability as regards their +# requirements in conditions enabling the security of their systems and/or +# data to be ensured and, more generally, to use and operate it in the +# same conditions as regards security. +# +# The fact that you are presently reading this means that you have had +# knowledge of the CeCILL license and that you accept its terms. + +source ../build_env.sh + +MUSIC_VERSION=6613c53 +mkdir -p ${MUSIC_VERSION}/bin + +git clone https://github.com/gersteinlab/MUSIC.git +cd MUSIC +git checkout ${MUSIC_VERSION} +make clean +make +cd .. +mv MUSIC/bin/MUSIC ${MUSIC_VERSION}/bin/. +mv MUSIC/bin/generate_multimappability_signal.csh ${MUSIC_VERSION}/bin/. +mv MUSIC/bin/run_MUSIC.csh ${MUSIC_VERSION}/bin/. + +rm -Rf MUSIC diff --git a/modulefiles/MUSIC/6613c53 b/modulefiles/MUSIC/6613c53 new file mode 100644 index 0000000000000000000000000000000000000000..691945b0ea59eff974091474253022b1296743d7 --- /dev/null +++ b/modulefiles/MUSIC/6613c53 @@ -0,0 +1,64 @@ +#%Module1.0#################################################################### +# Copyright claire burny for the LBMC UMR 5239 ©. +# contributor(s) : claire burny (2017) +# +# claire.burny@ens-lyon.fr +# +# This software is a computer program whose purpose is to manage dated file +# names in complience with the bioinformatic good practices used in the LBMC. +# +# This software is governed by the CeCILL license under French law and +# abiding by the rules of distribution of free software. You can use, +# modify and/ or redistribute the software under the terms of the CeCILL +# license as circulated by CEA, CNRS and INRIA at the following URL +# "http://www.cecill.info". +# +# As a counterpart to the access to the source code and rights to copy, +# modify and redistribute granted by the license, users are provided only +# with a limited warranty and the software's author, the holder of the +# economic rights, and the successive licensors have only limited +# liability. +# +# In this respect, the user's attention is drawn to the risks associated +# with loading, using, modifying and/or developing or reproducing the +# software by the user in light of its specific status of free software, +# that may mean that it is complicated to manipulate, and that also +# therefore means that it is reserved for developers and experienced +# professionals having in-depth computer knowledge. Users are therefore +# encouraged to load and test the software's suitability as regards their +# requirements in conditions enabling the security of their systems and/or +# data to be ensured and, more generally, to use and operate it in the +# same conditions as regards security. +# +# The fact that you are presently reading this means that you have had +# knowledge of the CeCILL license and that you accept its terms. +## +## +############################################################################### +# for Tcl script use only +set version 6613c53 +set modname MUSIC +set osarch "Debian 7" +set modroot /Xnfs/site/lbmcdb/common/modules/apps/MUSIC/6613c53 + +setenv LAST_MODULE $modname/$version + +############################################################################### +proc ModulesHelp { } { + global modname version osarch + puts stderr "\nThis set the environment variables for $modname $version - $osarch." +} + + +module-whatis "loads $modname $version ($osarch) environment" +############################################################################### + +# conflict +conflict $modname + +if [ module-info mode load ] { + prereq Base/psmn +} + +prepend-path PATH $modroot/bin +setenv MUSIC_PATH $modroot/bin