Commits · master · LBMC / RMI2 / translational_landscape_in_HIV_infected_cells · GitLab

14 Feb, 2022 9 commits
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/RMI2/translational_landscape_in_HIV_infected_cells · 3c18a9c2
  elabaron authored Feb 14, 2022
  
  3c18a9c2
- change profile to docker · be9a9f2c
  elabaron authored Feb 14, 2022
  
  be9a9f2c
- add comon gene name in result table · a3b1ea04
  elabaron authored Feb 14, 2022
  
  a3b1ea04
- coment useless figures · 5ec5459e
  elabaron authored Feb 14, 2022
  
  5ec5459e
- add missing barplot in figure 7 · a31d0c5b
  elabaron authored Feb 14, 2022
  
  a31d0c5b
- fix eraseNA option · a7aaa83d
  elabaron authored Feb 14, 2022
  
  a7aaa83d
- Correct function and eraseNA option in function · b0b7c2d8
  elabaron authored Feb 14, 2022
  
  b0b7c2d8
- Add figure2.R · 34f274c5
  elabaron authored Feb 14, 2022
  
  34f274c5
- add Riboseq vs RNAseq in figure 1 · ae0ca5ca
  elabaron authored Feb 14, 2022
  
  ae0ca5ca
14 Dec, 2021 17 commits
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/RMI2/translational_landscape_in_HIV_infected_cells · ec734ddc
  Labaronne Emmanuel authored Dec 14, 2021
  
  ec734ddc
- src/workflow_RNAseq.nf : add dedup option in workflow · e78cdf56
  Labaronne Emmanuel authored Dec 14, 2021
  
  e78cdf56
- src/workflow_RibosomeProfiling.nf : cosmetic changes · cb42f2d5
  Labaronne Emmanuel authored Dec 14, 2021
  
  cb42f2d5
- Merge branch 'dev' of gitbio.ens-lyon.fr:LBMC/RMI2/translational_landscape_in_HIV_infected_cells · 49d006f4
  elabaron authored Dec 14, 2021
  
  49d006f4
- src/workflow_RibosomeProfiling.nf · 84f8247b
  elabaron authored Dec 14, 2021
  
  84f8247b
- add script for get consensus seq of HIV2 genome · eb8a6c9e
  elabaron authored Dec 14, 2021
  
  eb8a6c9e
- add src/R_scripts/codons_function.R for randomForest database · 72fbf6b3
  elabaron authored Dec 14, 2021
  
  72fbf6b3
- add src/R_script/RandomForest.R and RandomForest_finalModel.R · 5d5bd747
  elabaron authored Dec 14, 2021
  
  5d5bd747
- :wq · 13a341f0
  elabaron authored Dec 14, 2021
```
Merge branch 'dev' of gitbio.ens-lyon.fr:LBMC/RMI2/translational_landscape_in_HIV_infected_cells
```
  13a341f0
- src/R_scripts/oRNAment.R : minor changes in RBP_in_genes function · 0797ff6d
  elabaron authored Dec 14, 2021
  
  0797ff6d
- src/R_scripts/functions.R : adapt MAplots · bbde9494
  elabaron authored Dec 14, 2021
  
  bbde9494
- add and update figures · 2095405d
  elabaron authored Dec 14, 2021
  
  2095405d
- src/R_scripts/SupT1_HIV1infection.R : add save raw counts matrix · 004b7d38
  elabaron authored Dec 14, 2021
  
  004b7d38
- cosmetic changes in src/workflow_RibosomeProfiling.nf · 16dd6b11
  elabaron authored Dec 14, 2021
  
  16dd6b11
- add dedup option in src/workflow_RibosomeProfiling.nf · b5f74835
  Labaronne Emmanuel authored Dec 14, 2021
  
  b5f74835
- src/nf_modules/fq2collapedFa.nf : change version from latest to 0.0.1 · 0037121d
  elabaron authored Dec 14, 2021
  
  0037121d
- src/RiboSeq_Mock_HIV1.sh : add RP_Jurakt analysis · 68e93e18
  elabaron authored Dec 14, 2021
  
  68e93e18
17 Nov, 2021 3 commits
- Merge branch 'master' of... · ff804a1f
  elabaron authored Nov 17, 2021
```
Merge branch 'master' of http://gitbio.ens-lyon.fr/LBMC/RMI2/translational_landscape_in_HIV_infected_cells
```
  ff804a1f
- add Jurkat Harringtonine analysis · 1eb9b072
  elabaron authored Nov 17, 2021
  
  1eb9b072
- add HIV1 gff files · c54dace6
  elabaron authored Nov 17, 2021
  
  c54dace6
16 Nov, 2021 4 commits
- merge of figure6.R · bfe6ee49
  elabaron authored Nov 16, 2021
  
  bfe6ee49
- function.R : add relatif option in clustering function · e48c45d5
  elabaron authored Nov 16, 2021
  
  e48c45d5
- figure6 : add barplot of utr5/cds reads · 79cc096a
  elabaron authored Nov 16, 2021
  
  79cc096a
- improve clustering options · 08fb3a2d
  elabaron authored Nov 16, 2021
  
  08fb3a2d
15 Nov, 2021 3 commits
- add figure7.R · cf90e71b
  Labaronne Emmanuel authored Nov 15, 2021
  
  cf90e71b
- add HTLV coverage · c27ae953
  Labaronne Emmanuel authored Nov 15, 2021
  
  c27ae953
- adapt mer_bigwig for all genomes · 4a1101a3
  Labaronne Emmanuel authored Nov 15, 2021
  
  4a1101a3
04 Nov, 2021 2 commits
- Merge branch 'master' of... · 45a8e3df
  elabaron authored Nov 04, 2021
```
Merge branch 'master' of http://gitbio.ens-lyon.fr/LBMC/RMI2/translational_landscape_in_HIV_infected_cells
```
  45a8e3df
- add virus genome and index · d9048397
  elabaron authored Nov 04, 2021
  
  d9048397
02 Nov, 2021 1 commit
- add Renilla mutant mapping · f89c807d
  elabaron authored Nov 02, 2021
  
  f89c807d
01 Nov, 2021 1 commit
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/RMI2/translational_landscape_in_HIV_infected_cells · 889cfba8
  elabaron authored Nov 01, 2021
  
  889cfba8