From 453c6b50da6d4f4ea15f149b57ff600610305cd0 Mon Sep 17 00:00:00 2001
From: CLUET David <david.cluet@ens-lyon.fr>
Date: Wed, 6 Dec 2023 09:45:25 +0100
Subject: [PATCH] Centralisation of Manu scripts over
---
src/{ => R_scripts}/01_Normalisation_via_DESeq_GenesStables.R | 0
src/{ => R_scripts}/02_stability_of_gene.R | 0
src/{ => R_scripts}/03_IndexTDDCalculation.R | 0
src/{ => R_scripts}/04_corr_binning_David_db.R | 0
src/{ => R_scripts}/04_corr_binning_IndexTDDas.R | 0
src/{ => R_scripts}/04_database_creation.R | 0
src/{ => R_scripts}/05_TopGenes.R | 0
src/{ => R_scripts}/06_subsetAnalysis_REJECTED.R | 0
src/{ => R_scripts}/07_RandomForest_Lympho.R | 0
src/{ => R_scripts}/08_Script_DESeq2_TE_activation.R | 0
src/{ => R_scripts}/boosted_tree.Rmd | 0
src/{ => R_scripts}/figures.R | 0
src/{ => R_scripts}/geneVizualisation.R | 0
src/{ => R_scripts}/gml_codon_vs_IndexTDD.R | 0
src/{ => R_scripts}/tdd_analysis.R | 0
src/{ => R_scripts}/tdd_analysis_boostedtree.R | 0
src/{ => R_scripts}/tdd_analysis_bt_cell_type.R | 0
src/{ => R_scripts}/tdd_analysis_bt_macro.R | 0
src/{ => R_scripts}/tdd_analysis_load.R | 0
src/{ => R_scripts}/tdd_analysis_rf.R | 0
src/{ => R_scripts}/tdd_analysis_svm.R | 0
21 files changed, 0 insertions(+), 0 deletions(-)
rename src/{ => R_scripts}/01_Normalisation_via_DESeq_GenesStables.R (100%)
rename src/{ => R_scripts}/02_stability_of_gene.R (100%)
rename src/{ => R_scripts}/03_IndexTDDCalculation.R (100%)
rename src/{ => R_scripts}/04_corr_binning_David_db.R (100%)
rename src/{ => R_scripts}/04_corr_binning_IndexTDDas.R (100%)
rename src/{ => R_scripts}/04_database_creation.R (100%)
rename src/{ => R_scripts}/05_TopGenes.R (100%)
rename src/{ => R_scripts}/06_subsetAnalysis_REJECTED.R (100%)
rename src/{ => R_scripts}/07_RandomForest_Lympho.R (100%)
rename src/{ => R_scripts}/08_Script_DESeq2_TE_activation.R (100%)
rename src/{ => R_scripts}/boosted_tree.Rmd (100%)
rename src/{ => R_scripts}/figures.R (100%)
rename src/{ => R_scripts}/geneVizualisation.R (100%)
rename src/{ => R_scripts}/gml_codon_vs_IndexTDD.R (100%)
rename src/{ => R_scripts}/tdd_analysis.R (100%)
rename src/{ => R_scripts}/tdd_analysis_boostedtree.R (100%)
rename src/{ => R_scripts}/tdd_analysis_bt_cell_type.R (100%)
rename src/{ => R_scripts}/tdd_analysis_bt_macro.R (100%)
rename src/{ => R_scripts}/tdd_analysis_load.R (100%)
rename src/{ => R_scripts}/tdd_analysis_rf.R (100%)
rename src/{ => R_scripts}/tdd_analysis_svm.R (100%)
diff --git a/src/01_Normalisation_via_DESeq_GenesStables.R b/src/R_scripts/01_Normalisation_via_DESeq_GenesStables.R
similarity index 100%
rename from src/01_Normalisation_via_DESeq_GenesStables.R
rename to src/R_scripts/01_Normalisation_via_DESeq_GenesStables.R
diff --git a/src/02_stability_of_gene.R b/src/R_scripts/02_stability_of_gene.R
similarity index 100%
rename from src/02_stability_of_gene.R
rename to src/R_scripts/02_stability_of_gene.R
diff --git a/src/03_IndexTDDCalculation.R b/src/R_scripts/03_IndexTDDCalculation.R
similarity index 100%
rename from src/03_IndexTDDCalculation.R
rename to src/R_scripts/03_IndexTDDCalculation.R
diff --git a/src/04_corr_binning_David_db.R b/src/R_scripts/04_corr_binning_David_db.R
similarity index 100%
rename from src/04_corr_binning_David_db.R
rename to src/R_scripts/04_corr_binning_David_db.R
diff --git a/src/04_corr_binning_IndexTDDas.R b/src/R_scripts/04_corr_binning_IndexTDDas.R
similarity index 100%
rename from src/04_corr_binning_IndexTDDas.R
rename to src/R_scripts/04_corr_binning_IndexTDDas.R
diff --git a/src/04_database_creation.R b/src/R_scripts/04_database_creation.R
similarity index 100%
rename from src/04_database_creation.R
rename to src/R_scripts/04_database_creation.R
diff --git a/src/05_TopGenes.R b/src/R_scripts/05_TopGenes.R
similarity index 100%
rename from src/05_TopGenes.R
rename to src/R_scripts/05_TopGenes.R
diff --git a/src/06_subsetAnalysis_REJECTED.R b/src/R_scripts/06_subsetAnalysis_REJECTED.R
similarity index 100%
rename from src/06_subsetAnalysis_REJECTED.R
rename to src/R_scripts/06_subsetAnalysis_REJECTED.R
diff --git a/src/07_RandomForest_Lympho.R b/src/R_scripts/07_RandomForest_Lympho.R
similarity index 100%
rename from src/07_RandomForest_Lympho.R
rename to src/R_scripts/07_RandomForest_Lympho.R
diff --git a/src/08_Script_DESeq2_TE_activation.R b/src/R_scripts/08_Script_DESeq2_TE_activation.R
similarity index 100%
rename from src/08_Script_DESeq2_TE_activation.R
rename to src/R_scripts/08_Script_DESeq2_TE_activation.R
diff --git a/src/boosted_tree.Rmd b/src/R_scripts/boosted_tree.Rmd
similarity index 100%
rename from src/boosted_tree.Rmd
rename to src/R_scripts/boosted_tree.Rmd
diff --git a/src/figures.R b/src/R_scripts/figures.R
similarity index 100%
rename from src/figures.R
rename to src/R_scripts/figures.R
diff --git a/src/geneVizualisation.R b/src/R_scripts/geneVizualisation.R
similarity index 100%
rename from src/geneVizualisation.R
rename to src/R_scripts/geneVizualisation.R
diff --git a/src/gml_codon_vs_IndexTDD.R b/src/R_scripts/gml_codon_vs_IndexTDD.R
similarity index 100%
rename from src/gml_codon_vs_IndexTDD.R
rename to src/R_scripts/gml_codon_vs_IndexTDD.R
diff --git a/src/tdd_analysis.R b/src/R_scripts/tdd_analysis.R
similarity index 100%
rename from src/tdd_analysis.R
rename to src/R_scripts/tdd_analysis.R
diff --git a/src/tdd_analysis_boostedtree.R b/src/R_scripts/tdd_analysis_boostedtree.R
similarity index 100%
rename from src/tdd_analysis_boostedtree.R
rename to src/R_scripts/tdd_analysis_boostedtree.R
diff --git a/src/tdd_analysis_bt_cell_type.R b/src/R_scripts/tdd_analysis_bt_cell_type.R
similarity index 100%
rename from src/tdd_analysis_bt_cell_type.R
rename to src/R_scripts/tdd_analysis_bt_cell_type.R
diff --git a/src/tdd_analysis_bt_macro.R b/src/R_scripts/tdd_analysis_bt_macro.R
similarity index 100%
rename from src/tdd_analysis_bt_macro.R
rename to src/R_scripts/tdd_analysis_bt_macro.R
diff --git a/src/tdd_analysis_load.R b/src/R_scripts/tdd_analysis_load.R
similarity index 100%
rename from src/tdd_analysis_load.R
rename to src/R_scripts/tdd_analysis_load.R
diff --git a/src/tdd_analysis_rf.R b/src/R_scripts/tdd_analysis_rf.R
similarity index 100%
rename from src/tdd_analysis_rf.R
rename to src/R_scripts/tdd_analysis_rf.R
diff --git a/src/tdd_analysis_svm.R b/src/R_scripts/tdd_analysis_svm.R
similarity index 100%
rename from src/tdd_analysis_svm.R
rename to src/R_scripts/tdd_analysis_svm.R
--
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