diff --git a/src/RNAseq.config b/src/RNAseq.config index 339769121c6f51bd561fd0d9a914dd97a6896204..db5a6c95a86453dd128de5a39816e4bb38a4a550 100644 --- a/src/RNAseq.config +++ b/src/RNAseq.config @@ -23,8 +23,8 @@ profiles { penv = 'openmp16' } withName: hisat2_human { - beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" - module = "hisat2/2.1.0:samtools/1.7" + beforeScript = "source $baseDir/.conda_psmn.sh" + module = "$baseDir/.conda_envs/hisat2_2.1.0" executor = "sge" clusterOptions = "-cwd -V" memory = "20GB"