diff --git a/environment.yaml b/environment.yaml deleted file mode 100644 index 115021ad2e289022fda71a22bff0726c59ef2518..0000000000000000000000000000000000000000 --- a/environment.yaml +++ /dev/null @@ -1,26 +0,0 @@ -name: ribo -channels: - - conda-forge - - defaults - - bioconda - - cyclus -dependencies: - - python=3.6 - - nextflow=19.04.1 - - openjdk=8 - - samtools>=1.4 - - sra-tools>=2.8.1 - - fastqc=0.11.8 - - setuptools - - pip - - numpy - - pandas - - matplotlib - - bowtie2=2.3.4.3 - - hisat2=2.1.0=py36h2d50403_1 - - pysam - - bedtools=2.27.1 - - cutadapt=1.18 - - pip: - - git+https://github.com/ribosomeprofiling/ribopy.git - - git+https://github.com/ribosomeprofiling/rfcommands.git