diff --git a/src/nextflow_template.sh b/src/nextflow_template.sh index d37a8de61dc2d92c3cf37ff1fe12f21770cd18aa..282eb31f544db275025436b0951d95eec64495db 100644 --- a/src/nextflow_template.sh +++ b/src/nextflow_template.sh @@ -8,9 +8,9 @@ nextflow src/RNAseq.nf -c src/RNAseq.config \ --do_fastqc true\ --do_dedup true\ --do_postgenome true\ - --adaptorR1 = "AGATCGGAAGAGCACACGTCTGAACTCCAGTCA"\ - --adaptorR2 = "AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT"\ - --strand = "FR"\ + --adaptorR1 "AGATCGGAAGAGCACACGTCTGAACTCCAGTCA"\ + --adaptorR2 "AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT"\ + --strand "FR"\ --fastq_raw "data/fastq/*{_R1,_R2}.fastq.gz"\ --output "results"\ --filter "data/filter/*.bt2"\