From 5580cafd084b469751ff3be8c4a1ba7b6e101df9 Mon Sep 17 00:00:00 2001
From: Emmanuel Labaronne <emmanuel.labaronne@ens-lyon.fr>
Date: Fri, 2 Oct 2020 09:56:12 +0200
Subject: [PATCH] src/nomr_coverage.sh : do the job
---
src/norm_coverage.sh | 2 ++
1 file changed, 2 insertions(+)
diff --git a/src/norm_coverage.sh b/src/norm_coverage.sh
index b5485369..abb3bcf6 100644
--- a/src/norm_coverage.sh
+++ b/src/norm_coverage.sh
@@ -41,3 +41,5 @@ factor=$(echo "1000000/($hg38)" | bc -l)
echo "hg38 counts : $hg38"
echo "scaling factor : $factor"
echo "bamCoverage -p ${cpus} --scaleFactor ${factor} --binSize ${binSize} -b ${bam} -o ${output}"
+
+bamCoverage -p ${cpus} --scaleFactor ${factor} --binSize ${binSize} -b ${bam} -o ${output}
--
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