From 2dc19a1225f2d37650a1c221a8c40cf1d62203c3 Mon Sep 17 00:00:00 2001
From: Emmanuel Labaronne <emmanuel.labaronne@ens-lyon.fr>
Date: Tue, 6 Apr 2021 10:15:38 +0200
Subject: [PATCH] src/nf_modules/ribotish/ribotish_quality.nf : typo changes
---
src/nf_modules/ribotish/ribotish_quality.nf | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/src/nf_modules/ribotish/ribotish_quality.nf b/src/nf_modules/ribotish/ribotish_quality.nf
index 2f5bcd6a..a29764f0 100644
--- a/src/nf_modules/ribotish/ribotish_quality.nf
+++ b/src/nf_modules/ribotish/ribotish_quality.nf
@@ -2,8 +2,13 @@ params.bam = "data/*{.bam,.bam.bai}"
params.gff = "data/*.gtf"
params.length = "25,35"
params.th = "0.5"
+params.output = "results/quality"
log.info "bam files : ${params.bam}"
+log.info "gff file : ${params.gff}"
+log.info "footprint length : ${params.length}"
+log.info "threashold : ${params.th}"
+log.info "output dir : ${params.output}"
Channel
.fromFilePairs( params.bam )
@@ -16,7 +21,7 @@ Channel
process ribotish_quality {
tag "$file_id"
- publishDir "results/quality/", mode: 'copy'
+ publishDir "${params.output}", mode: 'copy'
input:
set file_id, file(bam) from bam_files
--
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