diff --git a/src/nf_modules/ribotish/ribotish_quality.nf b/src/nf_modules/ribotish/ribotish_quality.nf index 2f5bcd6abdef1601337ff908abc0156a18d9c05f..a29764f04fbb71444271eae1fccac6f056075803 100644 --- a/src/nf_modules/ribotish/ribotish_quality.nf +++ b/src/nf_modules/ribotish/ribotish_quality.nf @@ -2,8 +2,13 @@ params.bam = "data/*{.bam,.bam.bai}" params.gff = "data/*.gtf" params.length = "25,35" params.th = "0.5" +params.output = "results/quality" log.info "bam files : ${params.bam}" +log.info "gff file : ${params.gff}" +log.info "footprint length : ${params.length}" +log.info "threashold : ${params.th}" +log.info "output dir : ${params.output}" Channel .fromFilePairs( params.bam ) @@ -16,7 +21,7 @@ Channel process ribotish_quality { tag "$file_id" - publishDir "results/quality/", mode: 'copy' + publishDir "${params.output}", mode: 'copy' input: set file_id, file(bam) from bam_files