From 1c45e57b20209a9aca36fdf94bd2c04a4233c1f3 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 5 Jun 2018 16:19:38 +0200
Subject: [PATCH] docker_modules: fix path

---
 src/docker_modules/BEDtools/2.25.0/docker_init.sh   | 2 +-
 src/docker_modules/Bowtie2/2.3.4.1/docker_init.sh   | 2 +-
 src/docker_modules/FastQC/0.11.5/docker_init.sh     | 2 +-
 src/docker_modules/HTSeq/0.8.0/docker_init.sh       | 2 +-
 src/docker_modules/Kallisto/0.43.1/docker_init.sh   | 2 +-
 src/docker_modules/MultiQC/1.0/docker_init.sh       | 2 +-
 src/docker_modules/RSEM/1.3.0/docker_init.sh        | 2 +-
 src/docker_modules/SAMtools/1.7/docker_init.sh      | 2 +-
 src/docker_modules/SRAtoolkit/2.8.2/docker_init.sh  | 2 +-
 src/docker_modules/Salmon/0.8.2/docker_init.sh      | 2 +-
 src/docker_modules/TopHat/2.1.1/docker_init.sh      | 2 +-
 src/docker_modules/Trimmomatic/0.36/docker_init.sh  | 2 +-
 src/docker_modules/UrQt/d62c1f8/docker_init.sh      | 2 +-
 src/docker_modules/canu/1.6/docker_init.sh          | 2 +-
 src/docker_modules/cutadapt/1.14/docker_init.sh     | 2 +-
 src/docker_modules/deepTools/3.0.2/docker_init.sh   | 2 +-
 src/docker_modules/file_handle/0.1.1/docker_init.sh | 2 +-
 src/docker_modules/pigz/2.4/docker_init.sh          | 2 +-
 18 files changed, 18 insertions(+), 18 deletions(-)

diff --git a/src/docker_modules/BEDtools/2.25.0/docker_init.sh b/src/docker_modules/BEDtools/2.25.0/docker_init.sh
index a2a49aa5..c5c6f802 100755
--- a/src/docker_modules/BEDtools/2.25.0/docker_init.sh
+++ b/src/docker_modules/BEDtools/2.25.0/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/BEDtools/2.25.0 -t 'bedtools:2.25.0'
+docker build src/docker_modules/BEDtools/2.25.0 -t 'bedtools:2.25.0'
diff --git a/src/docker_modules/Bowtie2/2.3.4.1/docker_init.sh b/src/docker_modules/Bowtie2/2.3.4.1/docker_init.sh
index 85f25def..bba04c2b 100755
--- a/src/docker_modules/Bowtie2/2.3.4.1/docker_init.sh
+++ b/src/docker_modules/Bowtie2/2.3.4.1/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/Bowtie2/2.3.4.1 -t 'bowtie2:2.3.4.1'
+docker build src/docker_modules/Bowtie2/2.3.4.1 -t 'bowtie2:2.3.4.1'
diff --git a/src/docker_modules/FastQC/0.11.5/docker_init.sh b/src/docker_modules/FastQC/0.11.5/docker_init.sh
index 570878e6..d8d557f5 100755
--- a/src/docker_modules/FastQC/0.11.5/docker_init.sh
+++ b/src/docker_modules/FastQC/0.11.5/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/FastQC/0.11.5 -t 'fastqc:0.11.5'
+docker build src/docker_modules/FastQC/0.11.5 -t 'fastqc:0.11.5'
diff --git a/src/docker_modules/HTSeq/0.8.0/docker_init.sh b/src/docker_modules/HTSeq/0.8.0/docker_init.sh
index 1c135c66..5b8415e2 100755
--- a/src/docker_modules/HTSeq/0.8.0/docker_init.sh
+++ b/src/docker_modules/HTSeq/0.8.0/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/HTSeq/0.8.0 -t 'htseq:0.8.0'
+docker build src/docker_modules/HTSeq/0.8.0 -t 'htseq:0.8.0'
diff --git a/src/docker_modules/Kallisto/0.43.1/docker_init.sh b/src/docker_modules/Kallisto/0.43.1/docker_init.sh
index af8c7658..8904daee 100755
--- a/src/docker_modules/Kallisto/0.43.1/docker_init.sh
+++ b/src/docker_modules/Kallisto/0.43.1/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/Kallisto/0.43.1 -t 'kallisto:0.43.1'
+docker build src/docker_modules/Kallisto/0.43.1 -t 'kallisto:0.43.1'
diff --git a/src/docker_modules/MultiQC/1.0/docker_init.sh b/src/docker_modules/MultiQC/1.0/docker_init.sh
index c49305f1..7fb1b64e 100755
--- a/src/docker_modules/MultiQC/1.0/docker_init.sh
+++ b/src/docker_modules/MultiQC/1.0/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/MultiQC/1.0 -t 'multiqc:1.0'
+docker build src/docker_modules/MultiQC/1.0 -t 'multiqc:1.0'
diff --git a/src/docker_modules/RSEM/1.3.0/docker_init.sh b/src/docker_modules/RSEM/1.3.0/docker_init.sh
index 498ea816..5d788282 100755
--- a/src/docker_modules/RSEM/1.3.0/docker_init.sh
+++ b/src/docker_modules/RSEM/1.3.0/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/RSEM/1.3.0 -t 'rsem:1.3.0'
+docker build src/docker_modules/RSEM/1.3.0 -t 'rsem:1.3.0'
diff --git a/src/docker_modules/SAMtools/1.7/docker_init.sh b/src/docker_modules/SAMtools/1.7/docker_init.sh
index 642b0d4c..31916f45 100755
--- a/src/docker_modules/SAMtools/1.7/docker_init.sh
+++ b/src/docker_modules/SAMtools/1.7/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/SAMtools/1.7 -t 'samtools:1.7'
+docker build src/docker_modules/SAMtools/1.7 -t 'samtools:1.7'
diff --git a/src/docker_modules/SRAtoolkit/2.8.2/docker_init.sh b/src/docker_modules/SRAtoolkit/2.8.2/docker_init.sh
index 07871a24..501f769e 100755
--- a/src/docker_modules/SRAtoolkit/2.8.2/docker_init.sh
+++ b/src/docker_modules/SRAtoolkit/2.8.2/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/SRAtoolkit/2.8.2 -t 'sratoolkit:2.8.2'
+docker build src/docker_modules/SRAtoolkit/2.8.2 -t 'sratoolkit:2.8.2'
diff --git a/src/docker_modules/Salmon/0.8.2/docker_init.sh b/src/docker_modules/Salmon/0.8.2/docker_init.sh
index ecfa970f..ea75cf11 100755
--- a/src/docker_modules/Salmon/0.8.2/docker_init.sh
+++ b/src/docker_modules/Salmon/0.8.2/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/Salmon/0.8.2 -t 'salmon:0.8.2'
+docker build src/docker_modules/Salmon/0.8.2 -t 'salmon:0.8.2'
diff --git a/src/docker_modules/TopHat/2.1.1/docker_init.sh b/src/docker_modules/TopHat/2.1.1/docker_init.sh
index 715677f2..55e782f2 100755
--- a/src/docker_modules/TopHat/2.1.1/docker_init.sh
+++ b/src/docker_modules/TopHat/2.1.1/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/TopHat/2.1.1 -t 'tophat:2.1.1'
+docker build src/docker_modules/TopHat/2.1.1 -t 'tophat:2.1.1'
diff --git a/src/docker_modules/Trimmomatic/0.36/docker_init.sh b/src/docker_modules/Trimmomatic/0.36/docker_init.sh
index 96ee9090..dd5c050d 100755
--- a/src/docker_modules/Trimmomatic/0.36/docker_init.sh
+++ b/src/docker_modules/Trimmomatic/0.36/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/Trimmomatic/0.36 -t 'trimmomatic:0.36'
+docker build src/docker_modules/Trimmomatic/0.36 -t 'trimmomatic:0.36'
diff --git a/src/docker_modules/UrQt/d62c1f8/docker_init.sh b/src/docker_modules/UrQt/d62c1f8/docker_init.sh
index 5a9e281b..98021380 100755
--- a/src/docker_modules/UrQt/d62c1f8/docker_init.sh
+++ b/src/docker_modules/UrQt/d62c1f8/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/UrQt/d62c1f8 -t 'urqt:62c1f8'
+docker build src/docker_modules/UrQt/d62c1f8 -t 'urqt:62c1f8'
diff --git a/src/docker_modules/canu/1.6/docker_init.sh b/src/docker_modules/canu/1.6/docker_init.sh
index b1579704..5e0e3b44 100755
--- a/src/docker_modules/canu/1.6/docker_init.sh
+++ b/src/docker_modules/canu/1.6/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/canu/1.6 -t 'canu:1.6'
+docker build src/docker_modules/canu/1.6 -t 'canu:1.6'
diff --git a/src/docker_modules/cutadapt/1.14/docker_init.sh b/src/docker_modules/cutadapt/1.14/docker_init.sh
index 57657469..8edfebf5 100755
--- a/src/docker_modules/cutadapt/1.14/docker_init.sh
+++ b/src/docker_modules/cutadapt/1.14/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/cutadapt/1.14 -t 'cutadapt:1.14'
+docker build src/docker_modules/cutadapt/1.14 -t 'cutadapt:1.14'
diff --git a/src/docker_modules/deepTools/3.0.2/docker_init.sh b/src/docker_modules/deepTools/3.0.2/docker_init.sh
index 23ea15b1..ed0f069b 100755
--- a/src/docker_modules/deepTools/3.0.2/docker_init.sh
+++ b/src/docker_modules/deepTools/3.0.2/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/deepTools/3.0.2 -t 'deeptools:3.0.2'
+docker build src/docker_modules/deepTools/3.0.2 -t 'deeptools:3.0.2'
diff --git a/src/docker_modules/file_handle/0.1.1/docker_init.sh b/src/docker_modules/file_handle/0.1.1/docker_init.sh
index 40644a7c..e7af3cb0 100755
--- a/src/docker_modules/file_handle/0.1.1/docker_init.sh
+++ b/src/docker_modules/file_handle/0.1.1/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/file_handle/0.1.1 -t 'file_handle:0.1.1'
+docker build src/docker_modules/file_handle/0.1.1 -t 'file_handle:0.1.1'
diff --git a/src/docker_modules/pigz/2.4/docker_init.sh b/src/docker_modules/pigz/2.4/docker_init.sh
index 1a0eeeb4..776a4c54 100755
--- a/src/docker_modules/pigz/2.4/docker_init.sh
+++ b/src/docker_modules/pigz/2.4/docker_init.sh
@@ -1,2 +1,2 @@
 #!/bin/sh
-docker build src/nf_modules/pigz/2.4 -t 'pigz:2.4'
+docker build src/docker_modules/pigz/2.4 -t 'pigz:2.4'
-- 
GitLab