diff --git a/src/RNAseq_cec.sh b/src/RNAseq_cec.sh
index d112a665553697320f2b415957ef169038fe5cce..fdb942d8ae0479d3075e681b8a4e301e7c76d8cc 100755
--- a/src/RNAseq_cec.sh
+++ b/src/RNAseq_cec.sh
@@ -1,7 +1,9 @@
+# grep WormBase c_elegans.PRJNA13758.WS278.annotations.gff3 > c_elegans.PRJNA13758.WS278.wormbase.gff3
+
 ./nextflow run src/RNAseq_cec.nf \
         -profile psmn \
         --fastq "subset/*_R{1,2}.fastq.gz" \
         --cds_fasta "data/c_elegans.PRJNA13758.WS278.all_transcripts.fa" \
         --genomic_fasta "data/c_elegans.PRJNA13758.WS278.genomic.fa" \
-        --genomic_gff3 "data/c_elegans.PRJNA13758.WS278.annotations.gff3" \
+        --genomic_gff3 "data/c_elegans.PRJNA13758.WS278.wormbase.gff3" \
         -resume