diff --git a/docker_analysis.sh b/docker_analysis.sh index d701a028b82475945bc5d65d98837ee67562accd..b3ffa656a1fc82ef75f22a0900f9b542344b7979 100755 --- a/docker_analysis.sh +++ b/docker_analysis.sh @@ -1,5 +1,5 @@ #!/bin/bash -R_CMD="-e criblejurkat::analysis(\"/root/\")" +R_CMD="-e criblejurkat::analysis(\"/root/${1}\")" docker run -it --volume $(pwd):/root/ lbmc/criblejurkat:1.0.0 R $R_CMD BASH_CMD="-e system(\"chown -R $(id -u ${USER}) /root/\")" docker run -it --volume $(pwd):/root/ lbmc/criblejurkat:1.0.0 R $BASH_CMD diff --git a/singularity_analysis.sh b/singularity_analysis.sh index 997b560f7af3b7c6fabb65990d7476039d8a45f0..786b1eefe94f95cd5924d445c7dc5c5a3381b5f4 100755 --- a/singularity_analysis.sh +++ b/singularity_analysis.sh @@ -1,3 +1,3 @@ #!/bin/bash -R_CMD="-e criblejurkat::analysis(\"$(pwd)\")" +R_CMD="-e criblejurkat::analysis(\"${1}\")" singularity exec docker://lbmc/criblejurkat:1.0.0 R $R_CMD