diff --git a/docker_analysis.sh b/docker_analysis.sh new file mode 100755 index 0000000000000000000000000000000000000000..d701a028b82475945bc5d65d98837ee67562accd --- /dev/null +++ b/docker_analysis.sh @@ -0,0 +1,5 @@ +#!/bin/bash +R_CMD="-e criblejurkat::analysis(\"/root/\")" +docker run -it --volume $(pwd):/root/ lbmc/criblejurkat:1.0.0 R $R_CMD +BASH_CMD="-e system(\"chown -R $(id -u ${USER}) /root/\")" +docker run -it --volume $(pwd):/root/ lbmc/criblejurkat:1.0.0 R $BASH_CMD diff --git a/singularity_analysis.sh b/singularity_analysis.sh new file mode 100755 index 0000000000000000000000000000000000000000..997b560f7af3b7c6fabb65990d7476039d8a45f0 --- /dev/null +++ b/singularity_analysis.sh @@ -0,0 +1,3 @@ +#!/bin/bash +R_CMD="-e criblejurkat::analysis(\"$(pwd)\")" +singularity exec docker://lbmc/criblejurkat:1.0.0 R $R_CMD