From feb68e2cffed0bbedb1c99efd8720d01d4bb9b0e Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 13 Nov 2023 09:54:07 +0100
Subject: [PATCH] kmerclust.nf: fix typo and change label of kmerclust_clust
---
src/bin/kmerclust_clust.R | 3 +--
src/bin/kmerclust_plot.R | 3 +--
src/modules/kmerclust.nf | 2 +-
3 files changed, 3 insertions(+), 5 deletions(-)
diff --git a/src/bin/kmerclust_clust.R b/src/bin/kmerclust_clust.R
index 5cc466e..bc0b298 100644
--- a/src/bin/kmerclust_clust.R
+++ b/src/bin/kmerclust_clust.R
@@ -1,5 +1,4 @@
-options(tidyverse.quiet = TRUE)
-library(kmerclust)
+suppressPackageStartupMessages(library(tidyverse))
library(tidyverse)
args <- commandArgs(trailingOnly = TRUE)
print(args)
diff --git a/src/bin/kmerclust_plot.R b/src/bin/kmerclust_plot.R
index e9e9f44..5642c23 100644
--- a/src/bin/kmerclust_plot.R
+++ b/src/bin/kmerclust_plot.R
@@ -1,6 +1,5 @@
-options(tidyverse.quiet = TRUE)
library(kmerclust)
-library(tidyverse)
+suppressPackageStartupMessages(library(tidyverse))
library(ggplot2)
args <- commandArgs(trailingOnly = TRUE)
diff --git a/src/modules/kmerclust.nf b/src/modules/kmerclust.nf
index 530c3f7..a19cd45 100644
--- a/src/modules/kmerclust.nf
+++ b/src/modules/kmerclust.nf
@@ -53,7 +53,7 @@ process KMERCLUST_BOOT {
process KMERCLUST_CLUST {
tag "$specie"
- label 'small_mem_mono_cpus'
+ label 'big_mem_mono_cpus'
container "lbmc/kmerclust:0.1.1"
publishDir "results/${params.kmer_size}/${specie}/", mode: 'copy'
--
GitLab