From ed018a7ec9cf801d47d66da0d06bee925a21cc6f Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 7 Jun 2023 15:47:20 +0200
Subject: [PATCH] add kmerclust module to main.nf
---
src/main.nf | 3 +++
src/modules/kmerclust.nf | 1 +
2 files changed, 4 insertions(+)
diff --git a/src/main.nf b/src/main.nf
index 5198b79..6a5799f 100644
--- a/src/main.nf
+++ b/src/main.nf
@@ -9,6 +9,8 @@ include { SPLIT } from "./modules/split"
include { FASTKMERS } from "./modules/fastkmers"
include { MERGEKMER } from "./modules/mergekmer"
include { COLLATEKMER} from "./modules/mergekmer"
+include { KMERCLUST} from "./modules/kmerclust"
+
Channel.fromPath( file(params.csv) )
.splitCsv(header: true)
@@ -25,4 +27,5 @@ workflow {
FASTKMERS(SPLIT.out.fastq.transpose())
MERGEKMER(FASTKMERS.out.csv.groupTuple())
COLLATEKMER(MERGEKMER.out.csv.map{it -> [it[0].specie, it[1]] }.groupTuple())
+ KMERCLUST(COLLATEKMER.out.csv)
}
diff --git a/src/modules/kmerclust.nf b/src/modules/kmerclust.nf
index 24d7bf2..4811396 100644
--- a/src/modules/kmerclust.nf
+++ b/src/modules/kmerclust.nf
@@ -10,6 +10,7 @@ process MERGEKMER {
output:
tuple val(specie), path("*.pdf"), emit: pdf
+ tuple val(specie), path("*.Rdata"), emit: rdata
path "versions.yml" , emit: versions
script:
--
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