From eb26d415f1355e8a486161ac576b103a30b89f67 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 20 Apr 2023 15:11:59 +0200
Subject: [PATCH] nextflow.config: update singlularity profile
---
src/nextflow.config | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/nextflow.config b/src/nextflow.config
index b11d292..51ba060 100644
--- a/src/nextflow.config
+++ b/src/nextflow.config
@@ -49,8 +49,9 @@ profiles {
singularity {
singularity.enabled = true
singularity.cacheDir = "./bin/"
+ singularity.runOptions = "--bind /media:/media"
process {
- errorStrategy = 'finish'
+ // errorStrategy = 'retry'
memory = '16GB'
withLabel: big_mem_mono_cpus {
cpus = 1
--
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