From 9ed794339e1b18f926d43abcefcfd3fa485598a5 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 10 May 2023 09:48:54 +0200
Subject: [PATCH] rename output for collatekmer
---
src/modules/mergekmer.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/modules/mergekmer.nf b/src/modules/mergekmer.nf
index 35fd56d..df60a29 100644
--- a/src/modules/mergekmer.nf
+++ b/src/modules/mergekmer.nf
@@ -36,13 +36,13 @@ process COLLATEKMER {
path(csv)
output:
- tuple path("*.csv"), emit: csv
+ path("*.csv"), emit: csv
path "versions.yml", emit: versions
script:
def args = task.ext.args ?: ''
"""
- mergekmer --csv ${csv} --output final.csv --collate
+ mergekmer --csv ${csv} --output ${csv[1].simpleName}.csv --collate
cat <<-END_VERSIONS > versions.yml
--
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