diff --git a/src/modules/mergekmer.nf b/src/modules/mergekmer.nf index 35fd56dfebaf954b17e4dc8156fb2ca5cff23098..df60a290cad7fe640bbb207a0b508bd8704c68da 100644 --- a/src/modules/mergekmer.nf +++ b/src/modules/mergekmer.nf @@ -36,13 +36,13 @@ process COLLATEKMER { path(csv) output: - tuple path("*.csv"), emit: csv + path("*.csv"), emit: csv path "versions.yml", emit: versions script: def args = task.ext.args ?: '' """ - mergekmer --csv ${csv} --output final.csv --collate + mergekmer --csv ${csv} --output ${csv[1].simpleName}.csv --collate cat <<-END_VERSIONS > versions.yml