diff --git a/src/mbelari_count_small.slurm b/src/mbelari_count_small.slurm new file mode 100644 index 0000000000000000000000000000000000000000..0252a47ba9bd12e45db870cc5d769f146b717bab --- /dev/null +++ b/src/mbelari_count_small.slurm @@ -0,0 +1,18 @@ +#!/bin/bash +#SBATCH --job-name=mbelari_count # Nom du jobe +#SBATCH --output=%j.log # Standard output et error log +#SBATCH --time=2-00:00:00 # Délai max = 7 jours +#SBATCH --ntasks=1 +#SBATCH --cpus-per-task=10 +#SBATCH --mem=200G +#SBATCH --partition=Lake + + +cd /scratch/Bio/lmodolo/kmer_diff/ + +KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff" +WORK=$(pwd) + +# kmdiff count +${KMDIFF} count -f ${WORK}/data/sample_mbelari.csv -d ${WORK}/results/mbelari_counts/ -t 10 +