From 8b57acd8f17e133eebd101b3cbb98ef3419c9922 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 16 May 2023 11:36:49 +0200
Subject: [PATCH] change output name for mergekmer collate
---
src/modules/mergekmer.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/modules/mergekmer.nf b/src/modules/mergekmer.nf
index 7ae901c..5bcbf8f 100644
--- a/src/modules/mergekmer.nf
+++ b/src/modules/mergekmer.nf
@@ -42,7 +42,7 @@ process COLLATEKMER {
script:
def args = task.ext.args ?: ''
"""
- mergekmer --csv ${csv} --output ${csv[1].simpleName}.csv --collate
+ mergekmer --csv ${csv} --output fusion.csv --collate
cat <<-END_VERSIONS > versions.yml
--
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