diff --git a/src/modules/mergekmer.nf b/src/modules/mergekmer.nf index 7ae901c99afe9955c2dddd605f3b9f2773dcfffb..5bcbf8f8cfc561da332c72177e76a1fd9a4c1b9c 100644 --- a/src/modules/mergekmer.nf +++ b/src/modules/mergekmer.nf @@ -42,7 +42,7 @@ process COLLATEKMER { script: def args = task.ext.args ?: '' """ - mergekmer --csv ${csv} --output ${csv[1].simpleName}.csv --collate + mergekmer --csv ${csv} --output fusion.csv --collate cat <<-END_VERSIONS > versions.yml