From 7d4f607ea42771d216e3955665d3926f213c58ba Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Thu, 2 Mar 2023 11:48:41 +0100 Subject: [PATCH] update path in sample.csv to fastq instead of fastq.gz --- data/sample_mbelari.csv | 18 +++++++++--------- data/sample_mlongespiculosa.csv | 4 ++-- data/sample_mspiculigera.csv | 4 ++-- 3 files changed, 13 insertions(+), 13 deletions(-) diff --git a/data/sample_mbelari.csv b/data/sample_mbelari.csv index 2894ac7..9cda10d 100644 --- a/data/sample_mbelari.csv +++ b/data/sample_mbelari.csv @@ -1,9 +1,9 @@ -female1: data/Mbelari_females/1_S1_L001_R1_001.fastq.gz ; data/Mbelari_females/1_S1_L001_R2_001.fastq.gz -female2: data/Mbelari_females/2_S2_L001_R1_001.fastq.gz ; data/Mbelari_females/2_S2_L001_R2_001.fastq.gz -female3: data/Mbelari_females/3_S3_L001_R1_001.fastq.gz ; data/Mbelari_females/3_S3_L001_R2_001.fastq.gz -female4: data/Mbelari_females/4_S4_L001_R1_001.fastq.gz ; data/Mbelari_females/4_S4_L001_R2_001.fastq.gz -female5: data/Mbelari_females/5_S5_L001_R1_001.fastq.gz ; data/Mbelari_females/5_S5_L001_R2_001.fastq.gz -female6: data/Mbelari_females/6_S6_L001_R1_001.fastq.gz ; data/Mbelari_females/6_S6_L001_R2_001.fastq.gz -female7: data/Mbelari_females/MRDR5_R1.fastq.gz ; data/Mbelari_females/MRDR5_R2.fastq.gz -male1: /data/Mbelari_males/JU2817_males_S11_L002_R1_001.fastq.gz ; /data/Mbelari_males/JU2817_males_S11_L002_R2_001.fastq.gz -male2: /data/Mbelari_males/MRDR6_R1.fastq.gz ; /data/Mbelari_males/MRDR6_R2.fastq.gz +female1: data/Mbelari_females/1_S1_L001_R1_001.fastq ; data/Mbelari_females/1_S1_L001_R2_001.fastq +female2: data/Mbelari_females/2_S2_L001_R1_001.fastq ; data/Mbelari_females/2_S2_L001_R2_001.fastq +female3: data/Mbelari_females/3_S3_L001_R1_001.fastq ; data/Mbelari_females/3_S3_L001_R2_001.fastq +female4: data/Mbelari_females/4_S4_L001_R1_001.fastq ; data/Mbelari_females/4_S4_L001_R2_001.fastq +female5: data/Mbelari_females/5_S5_L001_R1_001.fastq ; data/Mbelari_females/5_S5_L001_R2_001.fastq +female6: data/Mbelari_females/6_S6_L001_R1_001.fastq ; data/Mbelari_females/6_S6_L001_R2_001.fastq +female7: data/Mbelari_females/MRDR5_R1.fastq ; data/Mbelari_females/MRDR5_R2.fastq +male1: /data/Mbelari_males/JU2817_males_S11_L002_R1_001.fastq ; /data/Mbelari_males/JU2817_males_S11_L002_R2_001.fastq +male2: /data/Mbelari_males/MRDR6_R1.fastq ; /data/Mbelari_males/MRDR6_R2.fastq diff --git a/data/sample_mlongespiculosa.csv b/data/sample_mlongespiculosa.csv index 6fc58bf..f8cc76a 100644 --- a/data/sample_mlongespiculosa.csv +++ b/data/sample_mlongespiculosa.csv @@ -1,2 +1,2 @@ -female1: data/Mlongespiculosa_females/MRDR3_R1.fastq.gz ; data/Mlongespiculosa_females/MRDR3_R2.fastq.gz -male1: /data/Mlongespiculosa_males/MRDR4_R1.fastq.gz ; /data/Mlongespiculosa_males/MRDR4_R1.fastq.gz +female1: data/Mlongespiculosa_females/MRDR3_R1.fastq ; data/Mlongespiculosa_females/MRDR3_R2.fastq +male1: /data/Mlongespiculosa_males/MRDR4_R1.fastq ; /data/Mlongespiculosa_males/MRDR4_R1.fastq diff --git a/data/sample_mspiculigera.csv b/data/sample_mspiculigera.csv index 3ca9155..56a38f8 100644 --- a/data/sample_mspiculigera.csv +++ b/data/sample_mspiculigera.csv @@ -1,2 +1,2 @@ -female1: data/Mspiculigera_females/AF72-females_BIS_S8_L002_R1_001.fastq.gz ; data/Mspiculigera_females/AF72-females_BIS_S8_L002_R2_001.fastq.gz -male1: /data/Mspiculigera_males/AF72-males_S7_L002_R1_001.fastq.gz ; /data/Mspiculigera_males/AF72-males_S7_L002_R2_001.fastq.gz +female1: data/Mspiculigera_females/AF72-females_BIS_S8_L002_R1_001.fastq ; data/Mspiculigera_females/AF72-females_BIS_S8_L002_R2_001.fastq +male1: /data/Mspiculigera_males/AF72-males_S7_L002_R1_001.fastq ; /data/Mspiculigera_males/AF72-males_S7_L002_R2_001.fastq -- GitLab