From 7d211e608196a5bf8dd475c6c90c8907670797fa Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 2 May 2023 11:40:42 +0200
Subject: [PATCH] remove mergekmer2 from main.nf
---
src/main.nf | 6 ++----
1 file changed, 2 insertions(+), 4 deletions(-)
diff --git a/src/main.nf b/src/main.nf
index f0214c9..68b34e3 100644
--- a/src/main.nf
+++ b/src/main.nf
@@ -8,7 +8,6 @@ params.kmer_size = 31
include { SPLIT } from "./modules/split"
include { FASTKMERS } from "./modules/fastkmers"
include { MERGEKMER } from "./modules/mergekmer"
-include { MERGEKMER as MERGEKMER2 } from "./modules/mergekmer"
include { COLLATEKMER } from "./modules/mergekmer"
@@ -25,7 +24,6 @@ Channel.fromPath( file(params.csv) )
workflow {
SPLIT(fastq.r1.mix(fastq.r2))
FASTKMERS(SPLIT.out.fastq.transpose())
- MERGEKMER(FASTKMERS.out.csv.groupTuple(size: 10))
- MERGEKMER2(MERGEKMER.out.csv.groupTuple())
- COLLATEKMER(MERGEKMER2.out.csv.map{it -> it[1]}.collect())
+ MERGEKMER(FASTKMERS.out.csv.groupTuple())
+ COLLATEKMER(MERGEKMER.out.csv.map{it -> it[1]}.collect())
}
--
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