diff --git a/src/main.nf b/src/main.nf index f0214c9d25467239934dbf5d0697d46400b6b0a7..68b34e3ac463079dcc59e603ab437acfb5579892 100644 --- a/src/main.nf +++ b/src/main.nf @@ -8,7 +8,6 @@ params.kmer_size = 31 include { SPLIT } from "./modules/split" include { FASTKMERS } from "./modules/fastkmers" include { MERGEKMER } from "./modules/mergekmer" -include { MERGEKMER as MERGEKMER2 } from "./modules/mergekmer" include { COLLATEKMER } from "./modules/mergekmer" @@ -25,7 +24,6 @@ Channel.fromPath( file(params.csv) ) workflow { SPLIT(fastq.r1.mix(fastq.r2)) FASTKMERS(SPLIT.out.fastq.transpose()) - MERGEKMER(FASTKMERS.out.csv.groupTuple(size: 10)) - MERGEKMER2(MERGEKMER.out.csv.groupTuple()) - COLLATEKMER(MERGEKMER2.out.csv.map{it -> it[1]}.collect()) + MERGEKMER(FASTKMERS.out.csv.groupTuple()) + COLLATEKMER(MERGEKMER.out.csv.map{it -> it[1]}.collect()) }