From 76d3ebe5fe59dabd5565f8c089f69629ecb7314f Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Thu, 2 Mar 2023 15:01:09 +0100 Subject: [PATCH] slurm: add abs path to ch-run --- src/mbelari_count.slurm | 2 +- src/mlongespiculosa_count.slurm | 2 +- src/mspiculigera_count.slurm | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/mbelari_count.slurm b/src/mbelari_count.slurm index 1bf1788..0ff6752 100644 --- a/src/mbelari_count.slurm +++ b/src/mbelari_count.slurm @@ -10,7 +10,7 @@ cd /scratch/Bio/lmodolo/kmer_diff/ -alias kmdiff="ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff" +alias kmdiff="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff" WORK=$(pwd) # kmdiff count diff --git a/src/mlongespiculosa_count.slurm b/src/mlongespiculosa_count.slurm index 3fb60bd..bb33009 100644 --- a/src/mlongespiculosa_count.slurm +++ b/src/mlongespiculosa_count.slurm @@ -10,7 +10,7 @@ cd /scratch/Bio/lmodolo/kmer_diff/ -alias kmdiff="ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff" +alias kmdiff="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff" WORK=$(pwd) # kmdiff count diff --git a/src/mspiculigera_count.slurm b/src/mspiculigera_count.slurm index 49e5f83..be4db3a 100644 --- a/src/mspiculigera_count.slurm +++ b/src/mspiculigera_count.slurm @@ -11,7 +11,7 @@ cd /scratch/Bio/lmodolo/kmer_diff/ -alias kmdiff="ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff" +alias kmdiff="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff" WORK=$(pwd) # kmdiff count -- GitLab