diff --git a/src/mbelari_count.slurm b/src/mbelari_count.slurm
index 1bf178811308965a9f16931ce327350a96f4131d..0ff67521f0e9a1f09db588400da0d9a33758d926 100644
--- a/src/mbelari_count.slurm
+++ b/src/mbelari_count.slurm
@@ -10,7 +10,7 @@
 
 cd /scratch/Bio/lmodolo/kmer_diff/
 
-alias kmdiff="ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
+alias kmdiff="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
 WORK=$(pwd)
 
 # kmdiff count
diff --git a/src/mlongespiculosa_count.slurm b/src/mlongespiculosa_count.slurm
index 3fb60bd3c20195279ae773efbeaf7b722b68b7a6..bb33009c2dcfb8419e9a83e8686f2f68f449819b 100644
--- a/src/mlongespiculosa_count.slurm
+++ b/src/mlongespiculosa_count.slurm
@@ -10,7 +10,7 @@
 
 cd /scratch/Bio/lmodolo/kmer_diff/
 
-alias kmdiff="ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
+alias kmdiff="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
 WORK=$(pwd)
 
 # kmdiff count
diff --git a/src/mspiculigera_count.slurm b/src/mspiculigera_count.slurm
index 49e5f8361aa1ac03200251152fd5655980fda936..be4db3a5af2fdc7a26f6a278fbd5834606b06956 100644
--- a/src/mspiculigera_count.slurm
+++ b/src/mspiculigera_count.slurm
@@ -11,7 +11,7 @@
 
 cd /scratch/Bio/lmodolo/kmer_diff/
 
-alias kmdiff="ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
+alias kmdiff="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
 WORK=$(pwd)
 
 # kmdiff count