From 67bb0273579d9da674d2a1014ae48c627bb28d68 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 19 Apr 2023 09:18:19 +0200
Subject: [PATCH] add singularity profile
---
src/nextflow.config | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/src/nextflow.config b/src/nextflow.config
index 54b4f32..b11d292 100644
--- a/src/nextflow.config
+++ b/src/nextflow.config
@@ -46,4 +46,26 @@ profiles {
}
}
}
+ singularity {
+ singularity.enabled = true
+ singularity.cacheDir = "./bin/"
+ process {
+ errorStrategy = 'finish'
+ memory = '16GB'
+ withLabel: big_mem_mono_cpus {
+ cpus = 1
+ }
+ withLabel: big_mem_multi_cpus {
+ cpus = 4
+ }
+ withLabel: small_mem_mono_cpus {
+ cpus = 1
+ memory = '2GB'
+ }
+ withLabel: small_mem_multi_cpus {
+ cpus = 4
+ memory = '2GB'
+ }
+ }
+ }
}
--
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