From 5b03fdb522faa76171708501e6b8d2a944c5a9d4 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 4 Sep 2023 08:03:04 +0200
Subject: [PATCH] src/nextflow.config: add retry on error
---
src/nextflow.config | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nextflow.config b/src/nextflow.config
index 58daa85..76baf88 100644
--- a/src/nextflow.config
+++ b/src/nextflow.config
@@ -20,8 +20,8 @@ profiles {
charliecloud.runOptions = "--bind /scratch:/scratch --bind /Xnfs:/Xnfs --bind /home:/home"
process{
- //errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
- //maxRetries = 3
+ errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
+ maxRetries = 3
executor = "slurm"
queue = "Lake"
withLabel: big_mem_mono_cpus {
--
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