From 5554388ff3a2c86d9a6761e3836a220cb9f7ce14 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 9 May 2023 11:25:23 +0200
Subject: [PATCH] main.nf: keep r2 id information
---
src/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/main.nf b/src/main.nf
index 68b34e3..f8524d8 100644
--- a/src/main.nf
+++ b/src/main.nf
@@ -17,7 +17,7 @@ Channel.fromPath( file(params.csv) )
fastq_r1 = file("${row.r1}")
fastq_r2 = file("${row.r2}")
r1: [['id': fastq_r1.simpleName, 'specie': row.specie, 'sex': row.sex, 'read': 'r1'], fastq_r1]
- r2: [['id': fastq_r1.simpleName, 'specie': row.specie, 'sex': row.sex, 'read': 'r2'], fastq_r2]
+ r2: [['id': fastq_r2.simpleName, 'specie': row.specie, 'sex': row.sex, 'read': 'r2'], fastq_r2]
}
.set{ fastq }
--
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