From 4db67ed96c0cb2738361eb8fb70a65c521a5dcc2 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 17 Mar 2023 11:37:43 +0100
Subject: [PATCH] change mbelary count memory

---
 src/mbelari_count.slurm       |  6 +++---
 src/mbelari_count_small.slurm | 18 ------------------
 2 files changed, 3 insertions(+), 21 deletions(-)
 delete mode 100644 src/mbelari_count_small.slurm

diff --git a/src/mbelari_count.slurm b/src/mbelari_count.slurm
index 8bb3da6..0252a47 100644
--- a/src/mbelari_count.slurm
+++ b/src/mbelari_count.slurm
@@ -3,8 +3,8 @@
 #SBATCH --output=%j.log   # Standard output et error log
 #SBATCH --time=2-00:00:00             # Délai max = 7 jours
 #SBATCH --ntasks=1
-#SBATCH --cpus-per-task=32
-#SBATCH --mem=380G
+#SBATCH --cpus-per-task=10
+#SBATCH --mem=200G
 #SBATCH --partition=Lake
 
 
@@ -14,5 +14,5 @@ KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img
 WORK=$(pwd)
 
 # kmdiff count
-${KMDIFF} count -f ${WORK}/data/sample_mbelari.csv -d ${WORK}/results/mbelari_counts/ -t 32
+${KMDIFF} count -f ${WORK}/data/sample_mbelari.csv -d ${WORK}/results/mbelari_counts/ -t 10
 
diff --git a/src/mbelari_count_small.slurm b/src/mbelari_count_small.slurm
deleted file mode 100644
index 0252a47..0000000
--- a/src/mbelari_count_small.slurm
+++ /dev/null
@@ -1,18 +0,0 @@
-#!/bin/bash
-#SBATCH --job-name=mbelari_count    # Nom du jobe
-#SBATCH --output=%j.log   # Standard output et error log
-#SBATCH --time=2-00:00:00             # Délai max = 7 jours
-#SBATCH --ntasks=1
-#SBATCH --cpus-per-task=10
-#SBATCH --mem=200G
-#SBATCH --partition=Lake
-
-
-cd /scratch/Bio/lmodolo/kmer_diff/
-
-KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
-WORK=$(pwd)
-
-# kmdiff count
-${KMDIFF} count -f ${WORK}/data/sample_mbelari.csv -d ${WORK}/results/mbelari_counts/ -t 10
-
-- 
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