diff --git a/src/mbelari_count.slurm b/src/mbelari_count.slurm index 8bb3da6c445040c2f013c1a60623a2b5cf77da19..0252a47ba9bd12e45db870cc5d769f146b717bab 100644 --- a/src/mbelari_count.slurm +++ b/src/mbelari_count.slurm @@ -3,8 +3,8 @@ #SBATCH --output=%j.log # Standard output et error log #SBATCH --time=2-00:00:00 # Délai max = 7 jours #SBATCH --ntasks=1 -#SBATCH --cpus-per-task=32 -#SBATCH --mem=380G +#SBATCH --cpus-per-task=10 +#SBATCH --mem=200G #SBATCH --partition=Lake @@ -14,5 +14,5 @@ KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img WORK=$(pwd) # kmdiff count -${KMDIFF} count -f ${WORK}/data/sample_mbelari.csv -d ${WORK}/results/mbelari_counts/ -t 32 +${KMDIFF} count -f ${WORK}/data/sample_mbelari.csv -d ${WORK}/results/mbelari_counts/ -t 10 diff --git a/src/mbelari_count_small.slurm b/src/mbelari_count_small.slurm deleted file mode 100644 index 0252a47ba9bd12e45db870cc5d769f146b717bab..0000000000000000000000000000000000000000 --- a/src/mbelari_count_small.slurm +++ /dev/null @@ -1,18 +0,0 @@ -#!/bin/bash -#SBATCH --job-name=mbelari_count # Nom du jobe -#SBATCH --output=%j.log # Standard output et error log -#SBATCH --time=2-00:00:00 # Délai max = 7 jours -#SBATCH --ntasks=1 -#SBATCH --cpus-per-task=10 -#SBATCH --mem=200G -#SBATCH --partition=Lake - - -cd /scratch/Bio/lmodolo/kmer_diff/ - -KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff" -WORK=$(pwd) - -# kmdiff count -${KMDIFF} count -f ${WORK}/data/sample_mbelari.csv -d ${WORK}/results/mbelari_counts/ -t 10 -