From 317649bddcd50eee985bbcfff1ca53c74fdb0aec Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 5 Dec 2023 16:39:02 +0100
Subject: [PATCH] main.nf: merge sample by sample and r1 r2
---
src/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/main.nf b/src/main.nf
index 2c60025..e65bd25 100644
--- a/src/main.nf
+++ b/src/main.nf
@@ -31,7 +31,7 @@ workflow {
SUBSAMPLE_READ(fastq.r1.mix(fastq.r2))
SPLIT(SUBSAMPLE_READ.out.fastq)
FASTKMERS(SPLIT.out.fastq.transpose())
- MERGEKMER(FASTKMERS.out.csv.groupTuple())
+ MERGEKMER(FASTKMERS.out.csv.map{it -> [[it[0][0], it[0][1], it[0][2]], it[1]]}.groupTuple())
COLLATEKMER(MERGEKMER.out.csv.map{it -> [it[0].specie, it[1]] }.groupTuple())
KMERCLUST_LOAD(COLLATEKMER.out.csv, params_csv.collect())
KMERCLUST_BOOT(Channel.of(1..params.bootstrap).combine(KMERCLUST_LOAD.out.rdata))
--
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