From 239ed7861ebdd6dcf05619fd821be439e631a61f Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 12 May 2023 12:00:34 +0200
Subject: [PATCH] remove COLLATEKMER2
---
src/main.nf | 7 ++-----
1 file changed, 2 insertions(+), 5 deletions(-)
diff --git a/src/main.nf b/src/main.nf
index 3e9cfd6..563a087 100644
--- a/src/main.nf
+++ b/src/main.nf
@@ -8,9 +8,7 @@ params.kmer_size = 31
include { SPLIT } from "./modules/split"
include { FASTKMERS } from "./modules/fastkmers"
include { MERGEKMER } from "./modules/mergekmer"
-include { COLLATEKMER as COLLATEKMER1 } from "./modules/mergekmer"
-include { COLLATEKMER as COLLATEKMER2} from "./modules/mergekmer"
-
+include { COLLATEKMER} from "./modules/mergekmer"
Channel.fromPath( file(params.csv) )
.splitCsv(header: true)
@@ -26,6 +24,5 @@ workflow {
SPLIT(fastq.r1.mix(fastq.r2))
FASTKMERS(SPLIT.out.fastq.transpose())
MERGEKMER(FASTKMERS.out.csv.groupTuple())
- COLLATEKMER1(MERGEKMER.out.csv.map{it -> it[1]}.collate(5))
- COLLATEKMER2(COLLATEKMER1.out.csv.collect())
+ COLLATEKMER(MERGEKMER.out.csv.map{it -> it[1]}.collect())
}
--
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