diff --git a/src/main.nf b/src/main.nf index 3e9cfd695c83943bea7012371409fb85c08e4089..563a087f6349e0ec67f21b77e947210529cd8298 100644 --- a/src/main.nf +++ b/src/main.nf @@ -8,9 +8,7 @@ params.kmer_size = 31 include { SPLIT } from "./modules/split" include { FASTKMERS } from "./modules/fastkmers" include { MERGEKMER } from "./modules/mergekmer" -include { COLLATEKMER as COLLATEKMER1 } from "./modules/mergekmer" -include { COLLATEKMER as COLLATEKMER2} from "./modules/mergekmer" - +include { COLLATEKMER} from "./modules/mergekmer" Channel.fromPath( file(params.csv) ) .splitCsv(header: true) @@ -26,6 +24,5 @@ workflow { SPLIT(fastq.r1.mix(fastq.r2)) FASTKMERS(SPLIT.out.fastq.transpose()) MERGEKMER(FASTKMERS.out.csv.groupTuple()) - COLLATEKMER1(MERGEKMER.out.csv.map{it -> it[1]}.collate(5)) - COLLATEKMER2(COLLATEKMER1.out.csv.collect()) + COLLATEKMER(MERGEKMER.out.csv.map{it -> it[1]}.collect()) }